BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZF01FM1.SCF screened BAC_end
(962 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig240 632 0.0
>3x_Contig240
Length = 1244
Score = 632 bits (319), Expect = 0.0
Identities = 351/358 (98%), Gaps = 3/358 (0%)
Strand = Plus / Minus
Query: 85 ctctgagagttttccctactgttgcttgttgactttcagccttgatatcatttggcatgt 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 ctctgagagttttccctactgttgcttgttgactttcagccttgatatcatttggcatgt 298
Query: 145 acaaccttatatttccgatagactggattgaggagagagttataggaatgatggtacaag 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 acaaccttatatttccgatagactggattgaggagagagttataggaatgatggtacaag 238
Query: 205 ttgatttctttccttgn-cttcaggtctgataccttcggggaaagttggattaaatggtt 263
||||||||| |||||| | |||||||||||| ||||||||||||||||||||||||||
Sbjct: 237 ttgatttctctccttgttcagcaggtctgatac-ttcggggaaagttggattaaatggtt 179
Query: 264 tgatcaagttgatcggcgagtcagcatacatagtattgacgacaacattaacaatgtagg 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 tgatcaagttgatcggcgagtcagcatacatagtattgacgacaacattaacaatgtagg 119
Query: 324 actcttcatcagaatagactgcggtagggttacgtttgttagttctcttga-caaaatcg 382
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 118 actcttcatcagaatagactgcggtagggttacgtttgttagttctcttgagcaaaatcg 59
Query: 383 acaacagctgcccacccgtaatcatatttgttgtcaattttcacatttattagtctac 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58 acaacagctgcccacccgtaatcatatttgttgtcaattttcacatttattagtctac 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6388
Number of Sequences: 1807
Number of extensions: 6388
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 962
length of database: 10,358,551
effective HSP length: 16
effective length of query: 946
effective length of database: 10,329,639
effective search space: 9771838494
effective search space used: 9771838494
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)