BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZF01RM1.SCF screened BAC_end
(931 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1043 1400 0.0
>3x_Contig1043
Length = 5132
Score = 1400 bits (706), Expect = 0.0
Identities = 768/782 (98%), Gaps = 5/782 (0%)
Strand = Plus / Minus
Query: 43 gctttttgatatgatatgggcgttgactggcataatcaaaattcccccatttccattccg 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2757 gctttttgatatgatatgggcgttgactggcataatcaaaattcccccatttccattccg 2698
Query: 103 caggtatcacattccagaaatcatccacctcttttgttattttcc-aacagtagagtttt 161
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 2697 caggtatcacattccagaaatcatccacctcttttgttattttcccaacagtagagtttt 2638
Query: 162 ctaaatcccatggaacctcagccgacctttttactctaccaccgtccatcatgtactcat 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2637 ctaaatcccatggaacctcagccgacctttttactctaccaccgtccatcatgtactcat 2578
Query: 222 ttatggagccccataacgaatagcacttaatgaaggcggatctttcgttttggagtaaca 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2577 ttatggagccccataacgaatagcacttaatgaaggcggatctttcgttttggagtaaca 2518
Query: 282 attgggggtaagctttgtaaaacttgttaaaagaaccaatggtgactttacttttcaact 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2517 attgggggtaagctttgtaaaacttgttaaaagaaccaatggtgactttacttttcaact 2458
Query: 342 ggatattgaaagcagcagccaattgggtattagaagcactgacttcttgttctattccaa 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2457 ggatattgaaagcagcagccaattgggtattagaagcactgacttcttgttctattccaa 2398
Query: 402 tatccgacgactgggagtttattttggataaaccatatacatcaccgtttaatggaacat 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2397 tatccgacgactgggagtttattttggataaaccatatacatcaccgtttaatggaacat 2338
Query: 462 ttgttttaccggtattgctaacaccggaaagcccaaagaaatatgattcaggaagtggta 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2337 ttgttttaccggtattgctaacaccggaaagcccaaagaaatatgattcaggaagtggta 2278
Query: 522 attcaacgtccatgaatcgattgactgtaaaacaatgaccttcaccagtagaaataactc 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2277 attcaacgtccatgaatcgattgactgtaaaacaatgaccttcaccagtagaaataactc 2218
Query: 582 tatccaagcaaaatgcggaccaaaaagttctattccgtagctcgttcaacaacgggtctt 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2217 tatccaagcaaaatgcggaccaaaaagttctattccgtagctcgttcaacaacgggtctt 2158
Query: 642 gtttacaactgtgttgaaacctttcttcaaactgaattgcctgtatcatccttacagtac 701
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||
Sbjct: 2157 gtttacaactgtgttgaaacctttcgtcaaactgaattgcctgtatcatcctcacagcac 2098
Query: 702 aaccatgcagcatccaagctgcaaaataatcattatgaccccatttgacacaagatagtt 761
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 2097 aaccatgcagcatccaggctgcaaaataatcattatgaccccatttgacacaagatag-t 2039
Query: 762 aacataagcgattgatatttttccgatattaggcttactggataaagtggcacgttgtta 821
|| | |||||||||| || ||| |||||| ||||||||| |||||||||||| |||||||
Sbjct: 2038 aagagaagcgattgacatattt-cgatatcaggcttact-gataaagtggca-gttgtta 1982
Query: 822 aa 823
||
Sbjct: 1981 aa 1980
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6960
Number of Sequences: 1807
Number of extensions: 6960
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 931
length of database: 10,358,551
effective HSP length: 16
effective length of query: 915
effective length of database: 10,329,639
effective search space: 9451619685
effective search space used: 9451619685
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)