BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZF02FM1.SCF screened BAC_end
(984 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1509 1509 0.0
>3x_Contig1509
Length = 8584
Score = 1509 bits (761), Expect = 0.0
Identities = 801/809 (99%), Gaps = 4/809 (0%)
Strand = Plus / Minus
Query: 83 taaaatgcggttcacttcacaactgttagaatacaaatatctgcatcgaaaattttcgac 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7054 taaaatgcggttcacttcacaactgttagaatacaaatatctgcatcgaaaattttcgac 6995
Query: 143 tgggaatgacataaaagaaggtttagttaacgagtagctttgattttttaatcgaataga 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6994 tgggaatgacataaaagaaggtttagttaacgagtagctttgattttttaatcgaataga 6935
Query: 203 ccgaaacccatgtttttttcagattcttccttttcttcttccttttcttcttccttttct 262
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6934 ccgaaacccatgtcatcgtcagattcttccttttcttcttccttttcttcttccttttct 6875
Query: 263 tcttcagcagaagcgccagcagcaccagaagcagcagcagcaccagaggcaccaccagct 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6874 tcttcagcagaagcgccagcagcaccagaagcagcagcagcaccagaggcaccaccagct 6815
Query: 323 gggacagaagccaacttggtttgaccttcagcaaccaattcttggatggtcttaccttcc 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6814 gggacagaagccaacttggtttgaccttcagcaaccaattcttggatggtcttaccttcc 6755
Query: 383 aaagaggtcaacaaagcttgaatcttagagtcttcagcttcaacaccaacggcttcaaga 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6754 aaagaggtcaacaaagcttgaatcttagagtcttcagcttcaacaccaacggcttcaaga 6695
Query: 443 acgttcttgatttcagtagcggatggagattcaacaccaccttgagcgatcaacaagtaa 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6694 acgttcttgatttcagtagcggatggagattcaacaccaccttgagcgatcaacaagtaa 6635
Query: 503 gctgccaagtacttcatttctggtccggttttattttgaaataatcgatttaagcaagaa 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6634 gctgccaagtacttcatttctggtccggttttattttgaaataatcgatttaagcaagaa 6575
Query: 563 gcagactattccttggtctattaggaaatatgataataaataaataacaaaccagaaaga 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6574 gcagactattccttggtctattaggaaatatgataataaataaataacaaaccagaaaga 6515
Query: 623 acaagaaacaaagagaggtttaagtatataataaatattcgaattatatagccttgtatt 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6514 acaagaaacaaagagaggtttaagtatataataaatattcgaattatatagccttgtatt 6455
Query: 683 aagttgaacaagttttaaactcttctcatctctatttttttttcttcaatttcatccaag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6454 aagttgaacaagttttaaactcttctcatctctatttttttttcttcaatttcatccaag 6395
Query: 743 aaactttgcatcatcgtgaaaaatttcagactattctttgtaatcatgtacgaccactcg 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6394 aaactttgcatcatcgtgaaaaatttcagactattctttgtaatcatgtacgaccactcg 6335
Query: 803 ctaattgttggttgtctcatgaaaaaagttactaatcattatacacgngaaatacaaccc 862
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct: 6334 ctaattgttggttgtctcatgaaaaaagttactaatcattatacacg-gaaatacaa-cc 6277
Query: 863 acaacgatattttgaatcttaagagtgcc 891
||||||||| |||||||| ||||||||||
Sbjct: 6276 acaacgata-tttgaatc-taagagtgcc 6250
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,219
Number of Sequences: 1807
Number of extensions: 12219
Number of successful extensions: 307
Number of sequences better than 1.0e-20: 1
length of query: 984
length of database: 10,358,551
effective HSP length: 16
effective length of query: 968
effective length of database: 10,329,639
effective search space: 9999090552
effective search space used: 9999090552
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)