BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZF03RM1.SCF screened BAC_end
(938 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1092 1556 0.0
3x_Contig178 733 0.0
3x_Contig1750 394 e-109
3x_Contig1797 373 e-103
>3x_Contig1092
Length = 2520
Score = 1556 bits (785), Expect = 0.0
Identities = 874/895 (97%), Gaps = 8/895 (0%)
Strand = Plus / Plus
Query: 50 gcttgtaatagcgttatgttagagttcc-tgca-gtataaaat--ggtcc-caagtctgg 104
|||||||||||||||||||||||| ||| |||| |||| |||| ||||| |||||||||
Sbjct: 229 gcttgtaatagcgttatgttagagctccctgcaagtatgaaatatggtccacaagtctgg 288
Query: 105 tgcgtactgttaagatctgtatttggtgcagaagcattgtaaattggtggagatatatcc 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 tgcgtactgttaagatctgtatttggtgcagaagcattgtaaattggtggagatatatcc 348
Query: 165 atcgactcagggagccaatcatcactcggatgtctgctaccccagctgcggccacatttt 224
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 349 atcgactcagggagccaatcatcactcggatgtctgctaccccagctgcggccacagcgt 408
Query: 225 atggcatcacctaatgtagtgcttgaatcgattggtagcacatactgttcagtgcaaaat 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 atggcatcacctaatgtagtgcttgaatcgattggtagcacatactgttcagtgcaaaat 468
Query: 285 aatgttggtccaccaacttctagtgacattgttgactactttctgtgatttaacacaact 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 aatgttggtccaccaacttctagtgacattgttgactactttctgtgatttaacacaact 528
Query: 345 tgttggacagcatgatattatgaaggatatatgatcaaattgtaccattatcgagcactt 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 tgttggacagcatgatattatgaaggatatatgatcaaattgtaccattatcgagcactt 588
Query: 405 gtgataaataaatacacggaccctgaatttgaaaaagaaaaatctttgataaatatggtg 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 gtgataaataaatacacggaccctgaatttgaaaaagaaaaatctttgataaatatggtg 648
Query: 465 ttgcatctattgaacagagataagcagaggcgtaacgagaaaattaatcttcaatgggac 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 ttgcatctattgaacagagataagcagaggcgtaacgagaaaattaatcttcaatgggac 708
Query: 525 ttagtcaaaactgtatcagttgtagattgagagtgaattgaatatggttacgggatctaa 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 ttagtcaaaactgtatcagttgtagattgagagtgaattgaatatggttacgggatctaa 768
Query: 585 tgagtcacgtgatactacttggacaaaggccacctagccacaactcacttcacaatattc 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 tgagtcacgtgatactacttggacaaaggccacctagccacaactcacttcacaatattc 828
Query: 645 tataaggatccaattggttgtattgatgttcctgaacgaaattatatatgtaacgggatt 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 tataaggatccaattggttgtattgatgttcctgaacgaaattatatatgtaacgggatt 888
Query: 705 gtttcacgcatagtgaagcaatcaaagctcaagaaattgaggaagtttcccctacaaaat 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 889 gtttcacgcatagtgaagcaatcaaagctcaagaaattgaggaagtttcccctacaaaat 948
Query: 765 ataacatctacttattatctagcanaaatataaaatacaaggattgaatgctaaaaaaga 824
|||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||
Sbjct: 949 ataacatctacttattatctagcaaaaatataaaatacaa-gaatgaatgctaaaaaaga 1007
Query: 825 gtctgtcattcaaaatctagtccaacattccctcgtacatggcttgaacttgtg-actat 883
||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||
Sbjct: 1008 gtctgtcattcaaaatctagtccaacaatccctcgtacatggcttgaac-tgtgaactat 1066
Query: 884 gaactgaattattctttcatactggtactattctatgtatatcaattactcctcc 938
||||||||| | ||||||||||| |||||| |||||||||||||||||||||||
Sbjct: 1067 gaactgaatattcctttcatactgctactatactatgtatatcaattactcctcc 1121
>3x_Contig178
Length = 1315
Score = 733 bits (370), Expect = 0.0
Identities = 474/501 (94%), Gaps = 7/501 (1%)
Strand = Plus / Minus
Query: 50 gcttgtaatagcgttatgttagagttcc-tgca-gtataaaat--ggtcc-caagtctgg 104
|||||||||||||||||||||||| ||| |||| |||| |||| ||||| |||||| ||
Sbjct: 861 gcttgtaatagcgttatgttagagctccctgcaagtatgaaatatggtccacaagtccgg 802
Query: 105 tgcgtactgttaagatctgtatttggtgcagaagcattgtaaattggtggagatatatcc 164
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 801 tgcgtactgttaagatctgtatttggcgcagaagcattgtaaattggtggagatatatcc 742
Query: 165 atcgactcagggagccaatcatcactcggatgtctgctaccccagctgcggccacatttt 224
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 741 atcgactcagggagccaatcatcactcggatgtctgctaccccagctgcggccacagcgt 682
Query: 225 atggcatcacctaatgtagtgcttgaatcgattggtagcacatactgttcagtgcaaaat 284
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 681 atggcatcacctaatgtagtgcttgaatctattggtagcacatactgttcagtgcaaaat 622
Query: 285 aatgttggtccaccaacttctagtgacattgttgactactttctgtgatttaacacaact 344
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct: 621 aatgttggtccaccaacttccagtgacattgttgactactttctgtgatttaacacaagt 562
Query: 345 tgttggacagcatgatattatgaaggatatatgatcaaattgtaccattatcgagcactt 404
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgttggacagcataatattatgaaggatatatgatcaaattgtaccattatcgagcactt 502
Query: 405 gtgataaataaatacacggaccctgaatttgaaaaagaaaaatctttgataaatatggtg 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtgataaataaatacacggaccctgaatttgaaaaagaaaaatctttgataaatatggtg 442
Query: 465 ttgcatctattg-aacagagataagcagag-gcgtaacgagaaaattaatcttcaatggg 522
|||||||||||| |||| | ||||||| || | |||| | |||||||||||||||||
Sbjct: 441 ttgcatctattgcaacacacataagcacagcacctaaccacaaaattaatcttcaatgcc 382
Query: 523 acttagtcaaaactgtatcag 543
|||||||||||||||||||||
Sbjct: 381 acttagtcaaaactgtatcag 361
>3x_Contig1750
Length = 14427
Score = 394 bits (199), Expect = e-109
Identities = 285/310 (91%), Gaps = 3/310 (0%)
Strand = Plus / Plus
Query: 543 gttgtagattgagagtgaattgaatatggttacgggatctaatgagtcacgtgatactac 602
|||||| |||||||||||||||| |||||| ||||||| ||||| |||||||||||||||
Sbjct: 13515 gttgtaaattgagagtgaattgattatggtcacgggatttaatgggtcacgtgatactac 13574
Query: 603 ttggacaaaggccacctagccacaactcacttcacaatattctataaggatccaattggt 662
||| | ||||||| | |||||||||||||||||| ||||||||| || | ||||||||||
Sbjct: 13575 ttgaataaaggccgcatagccacaactcacttcagaatattctagaatgctccaattggt 13634
Query: 663 tgtattgatgttcctgaacgaaattatatatgtaacgggattgtttcacgcatagtgaag 722
|||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct: 13635 tgtattgatgttgctgaacgaaattatataagtagcgggattgtttcacgcatagtgaag 13694
Query: 723 caatcaaagctcaagaaattgaggaagttt-cccctacaaaatataacatctacttatta 781
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 13695 caatcaaagctcaagaaattgaggaagtttacccctacaaaatataacatctacttatta 13754
Query: 782 tctagcanaaatataaaatacaaggattgaatgctaaaaaagagtctgtcattcaaaatc 841
|||| || ||||||||||||||| || ||||| || ||||||| ||||||||||||||||
Sbjct: 13755 tctaacaaaaatataaaatacaa-gaatgaatact-aaaaagaatctgtcattcaaaatc 13812
Query: 842 tagtccaaca 851
|||||||||
Sbjct: 13813 cagtccaaca 13822
>3x_Contig1797
Length = 34782
Score = 373 bits (188), Expect = e-103
Identities = 283/311 (90%), Gaps = 3/311 (0%)
Strand = Plus / Minus
Query: 543 gttgtagattgagagtgaattgaatatggttacgggatctaatgagtcacgtgatactac 602
|||||| ||||||||||||||||||| ||| |||||||||||||||||||||||| ||||
Sbjct: 32556 gttgtaaattgagagtgaattgaatacggtcacgggatctaatgagtcacgtgatgctac 32497
Query: 603 ttggacaaaggccacctagccacaactcacttcacaatattctataaggatccaattggt 662
||| | ||||||||| |||||||| ||||||||| ||||||||| || | ||||||||||
Sbjct: 32496 ttgaataaaggccacgtagccacagctcacttcagaatattctagaatgctccaattggt 32437
Query: 663 tgtattgatgttcctgaacgaaattatatatgtaacgggattgtttcacgcatagtgaag 722
|||||||||||| |||||||||| |||||| ||||||||||||||||||| |||||||||
Sbjct: 32436 tgtattgatgttactgaacgaaactatataagtaacgggattgtttcacgaatagtgaag 32377
Query: 723 caatcaaagctc-aagaaattgaggaagttt-cccctacaaaatataacatctacttatt 780
|||||||||||| |||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 32376 caatcaaagctcaaagaaattgaggaagtttacctgtacaaaatataacatctacttatt 32317
Query: 781 atctagcanaaatataaaatacaaggattgaatgctaaaaaagagtctgtcattcaaaat 840
||||| || ||||||||||||||| || ||||| |||||||||| |||| ||||||||||
Sbjct: 32316 atctaacaaaaatataaaatacaa-gaatgaatactaaaaaagaatctggcattcaaaat 32258
Query: 841 ctagtccaaca 851
| |||||||||
Sbjct: 32257 ccagtccaaca 32247
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7212
Number of Sequences: 1807
Number of extensions: 7212
Number of successful extensions: 65
Number of sequences better than 1.0e-20: 4
length of query: 938
length of database: 10,358,551
effective HSP length: 16
effective length of query: 922
effective length of database: 10,329,639
effective search space: 9523927158
effective search space used: 9523927158
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)