BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZF04FM1.SCF screened BAC_end
(948 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig518 1600 0.0
>3x_Contig518
Length = 1471
Score = 1600 bits (807), Expect = 0.0
Identities = 850/862 (98%), Gaps = 2/862 (0%)
Strand = Plus / Plus
Query: 88 cagaaatagcttgaaatctttcagttgctgtgggatcatcgggatttttgtctggatgct 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 cagaaatagcttgaaatctttcagttgctgtgggatcatcgggatttttgtctggatgct 505
Query: 148 ccttcactgatttttttctgtacgctttcttgatatcaatctgtttggcatccgtagcta 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ccttcactgatttttttctgtacgctttcttgatatcaatctgtttggcatccgtagcta 565
Query: 208 cgcctagcaagtctttttatgtcgtgtctaccaccattcttttactatagatcctaaatg 267
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 cgcctagcaagtcataatatgtcgtgtctaccaccattcttttactatagatcctaaatg 625
Query: 268 ctcttctttctagaccgtttacctcagttatagcaccaaaccaaaagctccaaacactct 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ctcttctttctagaccgtttacctcagttatagcaccaaaccaaaagctccaaacactct 685
Query: 328 tagatatacgaatgtacctttcaaaagcctgaaacgttgctcgagtgataatatgtgctc 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 tagatatacgaatgtacctttcaaaagcctgaaacgttgctcgagtgataatatgtgctc 745
Query: 388 ttcaacaacgctgtcaactcatcaatgactactaaaatcattatgtatcgccttgttggt 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 ttcaacaacgctgtcaactcatcaatgactactaaaatcattatgtatcgccttgttggt 805
Query: 448 gcatttgatattgatatcgagttttatctgggtcgagtaataaagtgcgggtaactttta 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 gcatttgatattgatatcgagttttatctgggtcgagtaataaagtgcgggtaactttta 865
Query: 508 ataggtatattcaaagatacaagaactcccctgtatcggcaccagggtatacctgctaga 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 ataggtatattcaaagatacaagaactcccctgtatcggcaccagggtatacctgctaga 925
Query: 568 cgttatctatggacttagctactagatgttagtgttacttttcaaatgtatgagtattta 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 926 cgttatctatggacttagctactagatgttagtgttacttttcaaatgtatgagtattta 985
Query: 628 gttcaagctgtgggagtttctacttcggtatcttcatcataagtttcagcgataaaagcc 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 986 gttcaagctgtgggagtttctacttcggtatcttcatcataagtttcagcgataaaagcc 1045
Query: 688 gtaggattcgattctttcgtatccaaagcgatttcttctgcttcangctctgcttcaggc 747
|||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1046 gtaggattcgattcttccgtatccaaagcgatttcttctgcttcaggctctgcttcaggc 1105
Query: 748 gctgcttctgcttcctcatgtacttcttcttcttgttccacattctgtgcaatggacgga 807
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1106 gctgcttctgcttcctcatgtacttcttcttcatgttccacattctgtgcaatggacgga 1165
Query: 808 tctgaagtatgctgtatttcagactcatcgctgtttccagactcag-aattatttgcaga 866
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1166 tctgaagtatgctgtatttcagactcatcgctgtttccagactcagaaattatttgcaga 1225
Query: 867 ggttcttctggtgaggcttcgttcagatcttctgctt-aacatctttcaggccagctggt 925
||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 1226 ggttcttctggtgaggcttcgttcagatcttctgcttcaacatcttcaaggccagctggt 1285
Query: 926 tcagatgtcgcatttgcttccc 947
||||||| |||| |||||||||
Sbjct: 1286 tcagatggcgcaattgcttccc 1307
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6998
Number of Sequences: 1807
Number of extensions: 6998
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 948
length of database: 10,358,551
effective HSP length: 16
effective length of query: 932
effective length of database: 10,329,639
effective search space: 9627223548
effective search space used: 9627223548
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)