BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZF04RM1.SCF screened BAC_end
(922 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1623 1633 0.0
>3x_Contig1623
Length = 14379
Score = 1633 bits (824), Expect = 0.0
Identities = 863/874 (98%), Gaps = 2/874 (0%)
Strand = Plus / Minus
Query: 48 ctctacccatattcacggttttattgactggtaactgcataaagttggtaccaagtctgt 107
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 11497 ctctacccatattcacgggtctattgactggtaactgcataaagttggtaccaagtctgt 11438
Query: 108 gacgttgagtgtctgggtacgagaataatctggattgcaagacagaatcgttggatggct 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11437 gacgttgagtgtctgggtacgagaataatctggattgcaagacagaatcgttggatggct 11378
Query: 168 cgatacctggaatacaggtgtttgatggagagaaagcaagttgctcgatttcttcgaaat 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11377 cgatacctggaatacaggtgtttgatggagagaaagcaagttgctcgatttcttcgaaat 11318
Query: 228 agttatcgacgttatgggttagggtaatggtaccgaacttgcgcaatgggaattccttat 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11317 agttatcgacgttatgggttagggtaatggtaccgaacttgcgcaatgggaattccttat 11258
Query: 288 gtggccaaatcttggtcaaatcgttaatggaatacctgaaattttctgcttgctcagggg 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11257 gtggccaaatcttggtcaaatcgttaatggaatacctgaaattttctgcttgctcagggg 11198
Query: 348 tcatcgtctgaacatagcaattaaattttggacgttcaccggcttctagcttttcgaaca 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11197 tcatcgtctgaacatagcaattaaattttggacgttcaccggcttctagcttttcgaaca 11138
Query: 408 acaattggttattataatcaggattttcaccagctaacttattggcttcttccaatgaaa 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11137 acaattggttattataatcaggattttcaccagctaacttattggcttcttccaatgaaa 11078
Query: 468 gagtcttgaatccattctctggtaacacatgaatttgcacgtaagtcaacttaccttcag 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11077 gagtcttgaatccattctctggtaacacatgaatttgcacgtaagtcaacttaccttcag 11018
Query: 528 cattgataaacttataagtgtgaccggaatatgcactcatgtcagaccaagaagctggag 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11017 cattgataaacttataagtgtgaccggaatatgcactcatgtcagaccaagaagctggag 10958
Query: 588 tgcctctatcaccgaacatatacgtgatttgatggatggactcgatattttgagtcaaat 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10957 tgcctctatcaccgaacatatacgtgatttgatggatggactcgatattttgagtcaaat 10898
Query: 648 aatcccaatacatggaagtatcagaagcctgtcccaaatgattccttggggatctcttnt 707
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 10897 aatcccaatacatggaagtatcagaagcctgtcccaaatgattccttggggatctctttt 10838
Query: 708 gagtgtgaataaaatgagggaacttgnttgcatctctgatgaagaacaccgttgtattgt 767
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct: 10837 gagtgtgaataaaatgagggaacttgtttgcatctctgatgaagaacaccggtgtattgt 10778
Query: 768 tgaacacccagtcatggttcccccatttcgtgtaaaacttgaaactgaaaccttttggat 827
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 10777 tgaacacccagtcatggttcccccatttcgtgtaaaacttgaaactgaaacctcttggat 10718
Query: 828 ctttggctgtatctggagcccctgattcaccgccaacggttctgcatcttatgataccag 887
|| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 10717 ctctggctgtatctggagcccctgattcaccgccaacggtactgcatcttatgataccag 10658
Query: 888 gacacttgttacccgggagattggttatggtgct 921
|||||||| || |||||||||||| |||||||||
Sbjct: 10657 gacacttg-taaccgggagattgg-tatggtgct 10626
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5855
Number of Sequences: 1807
Number of extensions: 5855
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 922
length of database: 10,358,551
effective HSP length: 16
effective length of query: 906
effective length of database: 10,329,639
effective search space: 9358652934
effective search space used: 9358652934
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)