BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZF05FM1.SCF screened BAC_end
(955 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1742 1614 0.0
>3x_Contig1742
Length = 17167
Score = 1614 bits (814), Expect = 0.0
Identities = 856/867 (98%), Gaps = 3/867 (0%)
Strand = Plus / Minus
Query: 85 ttcatccctaatatctgttattggcttactattggaaaccaattgcggtggtaacgacaa 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14333 ttcatccctaatatctgttattggcttactattggaaaccaattgcggtggtaacgacaa 14274
Query: 145 ttttggaggcttggaattggttctcctagactctggtggtcggaacatcgaagccatctt 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14273 ttttggaggcttggaattggttctcctagactctggtggtcggaacatcgaagccatctt 14214
Query: 205 tgctttcacttcttttttgtcttttccgtgggtccatacaaataatataaatatcagtta 264
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14213 tgctttcacttcacacttgtcttttccgtgggtccatacaaataatataaatatcagtta 14154
Query: 265 atatcaccttatgcgacaagtaaacagcgtttttttctattcaaacgtttgagctgtttt 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14153 atatcaccttatgcgacaagtaaacagcgtttttttctattcaaacgtttgagctgtttt 14094
Query: 325 tctttgaagtgtccgttgatattttcttctatcgaagtaaaaaggggaaacctcggttct 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14093 tctttgaagtgtccgttgatattttcttctatcgaagtaaaaaggggaaacctcggttct 14034
Query: 385 cgtgtcttaatcctcagcggatcgcttttatactcagtttatcgttttaaaatgcctctc 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14033 cgtgtcttaatcctcagcggatcgcttttatactcagtttatcgttttaaaatgcctctc 13974
Query: 445 gtatcgtattccactgggatacgtccggaatattactcctctgggcctcaggattctctt 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13973 gtatcgtattccactgggatacgtccggaatattactcctctgggcctcaggattctctt 13914
Query: 505 atgtgccagatcatctttataatgcaaagagccgtttaagtgaatttgttttattaaagt 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13913 atgtgccagatcatctttataatgcaaagagccgtttaagtgaatttgttttattaaagt 13854
Query: 565 tcgaattaaagccttgtcctgaaaaaaaaaaaaattcagagacagccgacgtgatcgacc 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13853 tcgaattaaagccttgtcctgaaaaaaaaaaaaattcagagacagccgacgtgatcgacc 13794
Query: 625 agtacaaacattttaagattatataaggtttatcaactcattttaagttcaacatctacc 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13793 agtacaaacattttaagattatataaggtttatcaactcattttaagttcaacatctacc 13734
Query: 685 gtttcctttggttatttggaatcagattttgaagttgaaacatttcaagcttctacccat 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13733 gtttcctttggttatttggaatcagattttgaagttgaaacatttcaagcttctacccat 13674
Query: 745 aacttccatgctcgtattttagcagaaaccagttgatattatgtaagagatcactgagac 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13673 aacttccatgctcgtattttagcagaaaccagttgatattatgtaagagatcactgagac 13614
Query: 805 aaagttgattaagccaataatcgtcgcagtatgcatgttgtaggtaggtacacttntatt 864
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 13613 aaagttgattaagccaataatcgtcgcagtatgcatgttgtaggtaggtacacttttatt 13554
Query: 865 ctatcgnatccttcattgcttatcgatgccggngttattctttgctatgata-gccatcg 923
|||||| ||||||||||||||||||||||||| ||||||| ||||||||||| |||||||
Sbjct: 13553 ctatcgtatccttcattgcttatcgatgccggtgttattc-ttgctatgataggccatcg 13495
Query: 924 aatgtttaagggaagaatttattgttt 950
|||||| |||||||| |||||||||||
Sbjct: 13494 aatgttaaagggaag-atttattgttt 13469
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,136
Number of Sequences: 1807
Number of extensions: 14136
Number of successful extensions: 213
Number of sequences better than 1.0e-20: 1
length of query: 955
length of database: 10,358,551
effective HSP length: 16
effective length of query: 939
effective length of database: 10,329,639
effective search space: 9699531021
effective search space used: 9699531021
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)