BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZF05RM1.SCF screened BAC_end
(938 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1694 1641 0.0
3x_Contig1743 184 2e-46
3x_Contig1772 174 2e-43
3x_Contig1765 170 3e-42
3x_Contig1539 170 3e-42
3x_Contig1005 170 3e-42
3x_Contig1332 168 1e-41
>3x_Contig1694
Length = 18020
Score = 1641 bits (828), Expect = 0.0
Identities = 879/892 (98%), Gaps = 3/892 (0%)
Strand = Plus / Plus
Query: 50 taatagactcttaaaatatgaaacaggagtgtccgattcaatgaaatggaaaagttcaag 109
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 2379 taatagactcttaaaagaagaaacaggagtgtccgattcaatgaaatggaaaagttcaag 2438
Query: 110 aattgcgtttgttcaaatggaacaaataagtatgttcttacagttcgcaactaagtacgg 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2439 aattgcgtttgttcaaatggaacaaataagtatgttcttacagttcgcaactaagtacgg 2498
Query: 170 agttccacaagatgaacttttccagactgttgatctctatgaggaaaaagacccagcaat 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2499 agttccacaagatgaacttttccagactgttgatctctatgaggaaaaagacccagcaat 2558
Query: 230 tgtctaccaaaccattaagtcattatccagatatgctaattccaaacaccctgacctgtt 289
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 2559 tgtctaccaaaccattaagtcattatccagatatgcaaattccaaacaccctgacctgtt 2618
Query: 290 cccagtaataggtccacaattatcaacaaaaaggccgagaccacctgtgaaaggaaaacc 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2619 cccagtaataggtccacaattatcaacaaaaaggccgagaccacctgtgaaaggaaaacc 2678
Query: 350 atcgcacttaaagaatgttggatggagtactgtagaatatggttacatgaagggcgcaaa 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2679 atcgcacttaaagaatgttggatggagtactgtagaatatggttacatgaagggcgcaaa 2738
Query: 410 ccaatccaccgagggtattgttttcggaaataaacgtgatataacaatgaattgaacacc 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2739 ccaatccaccgagggtattgttttcggaaataaacgtgatataacaatgaattgaacacc 2798
Query: 470 ttgagattcctaaccggaaagccattcgattcactaagtattgagaccgatcaagcaata 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2799 ttgagattcctaaccggaaagccattcgattcactaagtattgagaccgatcaagcaata 2858
Query: 530 ttctgatgcttgggcaaccatgtatctcaaatttaccttctactgagggtcttttgactt 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2859 ttctgatgcttgggcaaccatgtatctcaaatttaccttctactgagggtcttttgactt 2918
Query: 590 ttatacattagttggcaatctgtacataaagcgaaaagattagtgctgattgatgtaaca 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2919 ttatacattagttggcaatctgtacataaagcgaaaagattagtgctgattgatgtaaca 2978
Query: 650 aaaagcacaacatattcataagggcaagcaacacttaaaaaggtaccgattgtgtacctt 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2979 aaaagcacaacatattcataagggcaagcaacacttaaaaaggtaccgattgtgtacctt 3038
Query: 710 gaagacatcaagatcttgcttctgaagtcgtagagtttctacgattcaaactagtgcaga 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3039 gaagacatcaagatcttgcttctgaagtcgtagagtttctacgattcaaactagtgcaga 3098
Query: 770 tgattaacgattcattaaacgaaac-aaaaaaataatggttgcgaagagattcgaactct 828
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 3099 tgattaacgatccattaaacgaaacaaaaaaaataatggttgcgaagagattcgaactct 3158
Query: 829 tgcatcttacgatacctgagtgttcccaactgttaggttgggtaagattggtatcttgaa 888
||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct: 3159 tgcatcttacgatacctgagtgttcccaactgtaaggttggttaagattggtatcttgaa 3218
Query: 889 tcaggcg-cttaaaccggtc-gtcacacaaccatttgaatgaattttgaaat 938
||||||| |||| |||| || | ||||||||||||||||||| |||||||||
Sbjct: 3219 tcaggcgccttagaccgctcggccacacaaccatttgaatgacttttgaaat 3270
>3x_Contig1743
Length = 20172
Score = 184 bits (93), Expect = 2e-46
Identities = 99/101 (98%)
Strand = Plus / Minus
Query: 796 aaaaaataatggttgcgaagagattcgaactcttgcatcttacgatacctgagtgttccc 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5399 aaaaaataatggttgcgaagagattcgaactcttgcatcttacgatacctgagtgttccc 5340
Query: 856 aactgttaggttgggtaagattggtatcttgaatcaggcgc 896
|||||| ||||||| ||||||||||||||||||||||||||
Sbjct: 5339 aactgtaaggttggttaagattggtatcttgaatcaggcgc 5299
>3x_Contig1772
Length = 25851
Score = 174 bits (88), Expect = 2e-43
Identities = 97/100 (97%)
Strand = Plus / Plus
Query: 797 aaaaataatggttgcgaagagattcgaactcttgcatcttacgatacctgagtgttccca 856
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11433 aaaaataatggttgcgaagagattcgaactcttgcatcttacgatacctgagtgttccca 11492
Query: 857 actgttaggttgggtaagattggtatcttgaatcaggcgc 896
||||| ||||||| |||||| |||||||||||||||||||
Sbjct: 11493 actgtaaggttggttaagataggtatcttgaatcaggcgc 11532
>3x_Contig1765
Length = 24733
Score = 170 bits (86), Expect = 3e-42
Identities = 98/102 (96%)
Strand = Plus / Minus
Query: 795 aaaaaaataatggttgcgaagagattcgaactcttgcatcttacgatacctgagtgttcc 854
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1421 aaaaaattaatggttgcgaagagattcgaactcttgcatcttacgatacctgagtgttcc 1362
Query: 855 caactgttaggttgggtaagattggtatcttgaatcaggcgc 896
||||||| ||||||| |||||| |||||||||||||||||||
Sbjct: 1361 caactgtaaggttggttaagataggtatcttgaatcaggcgc 1320
>3x_Contig1539
Length = 11016
Score = 170 bits (86), Expect = 3e-42
Identities = 92/94 (97%)
Strand = Plus / Plus
Query: 803 aatggttgcgaagagattcgaactcttgcatcttacgatacctgagtgttcccaactgtt 862
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2362 aatggttgcgaagagattcgaactcttgcatcttacgatacctgagtgttcccaactgta 2421
Query: 863 aggttgggtaagattggtatcttgaatcaggcgc 896
||||||| ||||||||||||||||||||||||||
Sbjct: 2422 aggttggttaagattggtatcttgaatcaggcgc 2455
>3x_Contig1005
Length = 3979
Score = 170 bits (86), Expect = 3e-42
Identities = 98/102 (96%)
Strand = Plus / Minus
Query: 795 aaaaaaataatggttgcgaagagattcgaactcttgcatcttacgatacctgagtgttcc 854
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 aaaaagataatggttgcgaagagattcgaactcttgcatcttacgatacctgagtgttcc 496
Query: 855 caactgttaggttgggtaagattggtatcttgaatcaggcgc 896
||||||| || |||| ||||||||||||||||||||||||||
Sbjct: 495 caactgtaagattggttaagattggtatcttgaatcaggcgc 454
>3x_Contig1332
Length = 6394
Score = 168 bits (85), Expect = 1e-41
Identities = 100/105 (95%)
Strand = Plus / Plus
Query: 792 aacaaaaaaataatggttgcgaagagattcgaactcttgcatcttacgatacctgagtgt 851
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 922 aacaaaaaagaaatggttgcgaagagattcgaactcttgcatcttacgatacctgagtgt 981
Query: 852 tcccaactgttaggttgggtaagattggtatcttgaatcaggcgc 896
|||||||||| ||||||| |||||| |||||||||||||||||||
Sbjct: 982 tcccaactgtaaggttggttaagataggtatcttgaatcaggcgc 1026
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6871
Number of Sequences: 1807
Number of extensions: 6871
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 7
length of query: 938
length of database: 10,358,551
effective HSP length: 16
effective length of query: 922
effective length of database: 10,329,639
effective search space: 9523927158
effective search space used: 9523927158
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)