BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZF10FM1.SCF screened BAC_end
(941 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1807 1419 0.0
>3x_Contig1807
Length = 66587
Score = 1419 bits (716), Expect = 0.0
Identities = 836/862 (96%), Gaps = 11/862 (1%)
Strand = Plus / Plus
Query: 86 cagagacca-ggtggtttcttcaagagagttgagctaaaataaaacatctccacaacaat 144
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59129 cagagaccaaggtggtttcttcaagagagttgagctaaaataaaacatctccacaacaat 59188
Query: 145 atgaggtcactatcaatgctcaattctttttatcttggtgtctggttaccagtcacccat 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59189 atgaggtcactatcaatgctcaattctttttatcttggtgtctggttaccagtcacccat 59248
Query: 205 atgtaagaccttgctctctttccatatagtcaattttatgtttagtgaaataacgaatta 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59249 atgtaagaccttgctctctttccatatagtcaattttatgtttagtgaaataacgaatta 59308
Query: 265 taaactgattgaatcataccgcacagtcatcaccttctattcttcgttgcattgtttcgt 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59309 taaactgattgaatcataccgcacagtcatcaccttctattcttcgttgcattgtttcgt 59368
Query: 325 tccacttcagagtattttagtaatgaacccagacagataacccctgatcataacaattat 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59369 tccacttcagagtattttagtaatgaacccagacagataacccctgatcataacaattat 59428
Query: 385 taagcttgtgttatcttaagagccgaatcgcagctgatgataggttcttgcgtgtgttgt 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59429 taagcttgtgttatcttaagagccgaatcgcagctgatgataggttcttgcgtgtgttgt 59488
Query: 445 agattatcctggaatgtatgcttggcctatgtaactcttccacataaatatgatctaaaa 504
|||||||||||||||||||||||||||||||||||||| ||||| ||| | || | ||||
Sbjct: 59489 agattatcctggaatgtatgcttggcctatgtaactctgccacagaaagaggagcgaaaa 59548
Query: 505 aataacactaaaagtatatcatgcgagatattcaaccttatacctatctatgactataat 564
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59549 aataacacgaaaagtatatcatgcgagatattcaaccttatacctatctatgactataat 59608
Query: 565 aagtagatgcaacatctcccaaatgcaaatttcaaagccagaaccatgagtgtcttccta 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59609 aagtagatgcaacatctcccaaatgcaaatttcaaagccagaaccatgagtgtcttccta 59668
Query: 625 ttgaagaattaactgatctaactctgatgttagagcgttgcaatgtgctttgtccgctag 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59669 ttgaagaattaactgatctaactctgatgttagagcgttgcaatgtgctttgtccgctag 59728
Query: 685 tattaatttgcatctttttaaagcgaataaggttcggtttacaattgtgaaggtgaagat 744
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59729 tattattttgcatctttttaaagcgaataaggttcggtttacaattgtgaaggtgaagat 59788
Query: 745 ggccgtatttttcttacttcacggttgggttagaagttcatagtgtggcctgaacttaag 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 59789 ggccgtatttttcttacttcacggttgggttagaagttcatagtgtggcctgaac-taag 59847
Query: 805 c-acgtactcgaaa-taaattactgcacaaacttaaaggnnaaacagtatcttttagaaa 862
| |||||||||||| |||||||||||||||||||||||| || ||||| ||||| ||
Sbjct: 59848 caacgtactcgaaattaaattactgcacaaacttaaagggaaacaagtattctttaggaa 59907
Query: 863 gag-agtcagcagaatccacagttttt-atagacgattagc-actggcagt-cttttga- 917
||| ||||||||||||||||||||||| |||||||| |||| ||||||||| |||||||
Sbjct: 59908 gagaagtcagcagaatccacagtttttaatagacga-tagcaactggcagtgcttttgac 59966
Query: 918 tggaaa-tctcgcatttctatt 938
|||||| |||||||||||||||
Sbjct: 59967 tggaaattctcgcatttctatt 59988
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5983
Number of Sequences: 1807
Number of extensions: 5983
Number of successful extensions: 26
Number of sequences better than 1.0e-20: 1
length of query: 941
length of database: 10,358,551
effective HSP length: 16
effective length of query: 925
effective length of database: 10,329,639
effective search space: 9554916075
effective search space used: 9554916075
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)