BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZF10RM1.SCF screened BAC_end
(938 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1782 1128 0.0
3x_Contig662 327 2e-89
>3x_Contig1782
Length = 24703
Score = 1128 bits (569), Expect = 0.0
Identities = 581/585 (99%)
Strand = Plus / Minus
Query: 49 gctttaattagatatattgatttcttgcttttaatgaaaacatcaacactttacacaatt 108
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 601 gctttaattagatatattgatttcaatcttttaatgaaaacatcaacactttacacaatt 542
Query: 109 acgcaacttaaaaggaagaggaaggaaacacactaaggtcagcgaagtgtcctacttgca 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 acgcaacttaaaaggaagaggaaggaaacacactaaggtcagcgaagtgtcctacttgca 482
Query: 169 aactgcattgctataatttatcatcaagagcacattattgctattagttacagcgttgtt 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 aactgcattgctataatttatcatcaagagcacattattgctattagttacagcgttgtt 422
Query: 229 ccttgaagtttgttgcaaaatgtcatcttccgatatattctatgttttgaacatcagacc 288
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 421 ccttgaagtttgttgcaaaatgtcatcttccgatatattcgatgttttgaacatcagacc 362
Query: 289 taagtcttcttctccagatgcagaggcccaaacgcctacaccaagttctggtacagtgaa 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 taagtcttcttctccagatgcagaggcccaaacgcctacaccaagttctggtacagtgaa 302
Query: 349 acataacaagccacaagttacgggtatccagagagaattatacagcttattgggtgataa 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 acataacaagccacaagttacgggtatccagagagaattatacagcttattgggtgataa 242
Query: 409 tacaccaacggtgcccataaaacagggcaataaatttaaagattcgttgaactccaacat 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tacaccaacggtgcccataaaacagggcaataaatttaaagattcgttgaactccaacat 182
Query: 469 caagccctcaccttggtcctttgtcgagttcgaggctaactctcatttgaagttacgaca 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 caagccctcaccttggtcctttgtcgagttcgaggctaactctcatttgaagttacgaca 122
Query: 529 ctgggtgaagggttctaaggaattggtcggtgctacagttgaaccaagttcttttgccaa 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ctgggtgaagggttctaaggaattggtcggtgctacagttgaaccaagttcttttgccaa 62
Query: 589 attcaatcaacatttgactataccttctttcgatgagcaagaatt 633
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 attcaatcaacatttgactataccttctttcgatgagcaagaatt 17
>3x_Contig662
Length = 2162
Score = 327 bits (165), Expect = 2e-89
Identities = 222/237 (93%), Gaps = 3/237 (1%)
Strand = Plus / Minus
Query: 664 gtggaaatacggtgaagttcaatacttgttcgatctttgtagaaactatgatatgaaatg 723
|||||| || ||||| |||||||||||||||||||||||||||||||||| |||||| ||
Sbjct: 2008 gtggaactaaggtgacgttcaatacttgttcgatctttgtagaaactatgctatgaactg 1949
Query: 724 gtttgttatcgcagacagatttaactacaacggtactgaaaggaagttggacgatttaaa 783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1948 gtttgttatcgcagacagatttaactacaacggtactgaaaggaagttggacgatttaaa 1889
Query: 784 agagatgttctatacagtgtgccaatggtattttttatacaaggattcggatattcccct 843
||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||
Sbjct: 1888 agagatgttctatacagtgtgccaatggtatttcttatacaaggatccggataatcccct 1829
Query: 844 attctcacagttggaatttcccccaggtaaaagaaattggaaaagaaagtagtattt 900
| |||||||||| |||||||||| ||| ||||| |||||| |||||||| |||||||
Sbjct: 1828 aatctcacagtt-gaatttccccaagg-aaaaggaattgg-aaagaaagaagtattt 1775
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7530
Number of Sequences: 1807
Number of extensions: 7530
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 2
length of query: 938
length of database: 10,358,551
effective HSP length: 16
effective length of query: 922
effective length of database: 10,329,639
effective search space: 9523927158
effective search space used: 9523927158
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)