BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZF12RM1.SCF screened BAC_end
(938 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig804 1584 0.0
>3x_Contig804
Length = 3085
Score = 1584 bits (799), Expect = 0.0
Identities = 842/855 (98%), Gaps = 1/855 (0%)
Strand = Plus / Plus
Query: 44 cttgaaagcgccttcgggaacgatggtgtcgtttagttggttgaagaagccagcaccatc 103
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct: 1179 cttgaaagcgccttcgggaacgaatttgtcgtttagttggttgaagaagtcagcaccatc 1238
Query: 104 ttcttctgactttttgatgatgtcttctttggcatcatctaatgataatgcatctttcaa 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1239 ttcttctgactttttgatgatgtcttctttggcatcatctaatgataatgcatctttcaa 1298
Query: 164 gtaaagtgcagttccatccatagatagattctctagtaaattccagtcatcttttttttt 223
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 1299 gtaaagtgcagttccatccatagatagattctctagtaaattccagtcatcttcgtttgt 1358
Query: 224 tgcgttgatcttttgtgataatctcttattgatcaatttctttaagtccttggatttcaa 283
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1359 tgcgttgatcttttgtgataatctcttattgatcaatttcacgaagtccttggatttcaa 1418
Query: 284 ggactcatcgaaaagctgattcttttccagtccagaaatacaaggttttactacactgac 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1419 ggactcatcgaaaagctgattcttttccagtccagaaatacaaggttttactacactgac 1478
Query: 344 acctttaccatcatcggatattctaaccagcttaccaccgaatgcccattgagcggcagg 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1479 acctttaccatcatcggatattctaaccagcttaccaccgaatgcccattgagcggcagg 1538
Query: 404 agatttgttgccgtaccattttggggcttggatcttgacagtgttaggtttgtcatcaac 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1539 agatttgttgccgtaccattttggggcttggatcttgacagtgttaggtttgtcatcaac 1598
Query: 464 tgagttggaggttacattgttccagaattcatcctcagaagcatgttgcttactctcatt 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1599 tgagttggaggttacattgttccagaattcatcctcagaagcatgttgcttactctcatt 1658
Query: 524 tgcctgagcatccaaggtattgctcaaattttgcaacgtttgaacgacgatcttactatc 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1659 tgcctgagcatccaaggtattgctcaaattttgcaacgtttgaacgacgatcttactatc 1718
Query: 584 aaaggatgcggatgcaaataaatctggagcttcaggagcaaatttggatttaaagaccca 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1719 aaaggatgcggatgcaaataaatctggagcttcaggagcaaatttggatttaaagaccca 1778
Query: 644 gttaccacgtggagcgaactgagttaagatggagccttcttgcggattccataacaccga 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1779 gttaccacgtggagcgaactgagttaagatggagccttcttgcggattccataacaccga 1838
Query: 704 agtgttatcacgaccactggataacaatagattttcatcttgtttgcaccaatccaacga 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1839 agtgttatcacgaccactggataacaatagattttcatcttgtttgcaccaatccaacga 1898
Query: 764 taaaacaccctttgaatgtccttgtgatagcactttcaatggtacatgagcatttcttag 823
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1899 taaaacaccctttgaatgtccttgtgatagcactttcaatggtacatgagcatttcttag 1958
Query: 824 atcccacgttaggacaagaggttctgtatctgagctagaggcggttgcaataatggttag 883
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1959 atcccacgttaggacaagaggttctgtatctgagctagaggcggttgcaataatgg-tag 2017
Query: 884 acctgtttggatgcc 898
| ||| |||||||||
Sbjct: 2018 agctggttggatgcc 2032
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8007
Number of Sequences: 1807
Number of extensions: 8007
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 938
length of database: 10,358,551
effective HSP length: 16
effective length of query: 922
effective length of database: 10,329,639
effective search space: 9523927158
effective search space used: 9523927158
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)