BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZG01FM1.SCF screened BAC_end
(962 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1589 1487 0.0
>3x_Contig1589
Length = 10239
Score = 1487 bits (750), Expect = 0.0
Identities = 827/844 (97%), Gaps = 7/844 (0%)
Strand = Plus / Minus
Query: 88 tagctgagaagaatgcacatgctagcaacgcaatgcagctatttaaccgtaatgaagaaa 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8282 tagctgagaagaatgcacatgctagcaacgcaatgcagctatttaaccgtaatgaagaaa 8223
Query: 148 ttctaactcaattgaaaaactgtgaaatgcacatatgtcagttgacatcattgaccaaag 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8222 ttctaactcaattgaaaaactgtgaaatgcacatatgtcagttgacatcattgaccaaag 8163
Query: 208 aatacgaaactgtatataataaacattcaaagagatatggaagaattcaataaagacaag 267
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8162 aatacgaaactg-agataataaacattcaaagagatatggaagaattcaataaagacaag 8104
Query: 268 ggttcaaagctcaggcagttagaagctaatctctctgaagtctctgcagaagtggaaaaa 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8103 ggttcaaagctcaggcagttagaagctaatctctctgaagtctctgcagaagtggaaaaa 8044
Query: 328 ttagacactgatacggctaagctgtttgatgaatatcagaacttgagttttgacacagaa 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8043 ttagacactgatacggctaagctgtttgatgaatatcagaacttgagttttgacacagaa 7984
Query: 388 cagctacacacagatatttctaacgcccaaaatgaagtatcaattgcagagaaaaggctt 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7983 cagctacacacagatatttctaacgcccaaaatgaagtatcaattgcagagaaaaggctt 7924
Query: 448 gcagaactggaaacaacgtgtaatgagtacgagggcgttgtgaggaccaaaaagtctgaa 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7923 gcagaactggaaacaacgtgtaatgagtacgagggcgttgtgaggaccaaaaagtctgaa 7864
Query: 508 cttcacgaagtacacagtattttacaagaggaaatgtccagactttcaggaatggaagat 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7863 cttcacgaagtacacagtattttacaagaggaaatgtccagactttcaggaatggaagat 7804
Query: 568 gagatatcagaactagagttattgcttaaaaataagaaccatctactttcaacttcggaa 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7803 gagatatcagaactagagttattgcttaaaaataagaaccatctactttcaacttcggaa 7744
Query: 628 gtggatttacagaagattacaaacgacttgcataaatacaagaataacacttttggcatc 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7743 gtggatttacagaagattacaaacgacttgcataaatacaagaataacacttttggcatc 7684
Query: 688 gatcaagccattgaaaatttaatcaacgaaaatgattggttggaagatacttncatggtc 747
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 7683 gatcaagccattgaaaatttaatcaacgaaaatgattggttggaagatacttccatggtc 7624
Query: 748 aatagcatnctgacacagaataagaacattaatctagatcagtacaagaaacgtggtttc 807
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 7623 aatagcatcttgacacagaataagaacattaatctagatcagtacaagaaacgtggttcc 7564
Query: 808 gatttagccg-aagctttcagagcttaag-aggaaagtgaacccaggagt-atgagtatg 864
|||||||||| |||||||||||||||||| ||||| |||||||||| || |||||||||
Sbjct: 7563 gatttagccgaaagctttcagagcttaagaaggaaggtgaacccagaggtaatgagtatg 7504
Query: 865 attgagagtgtagagaaaagggaaac-gcattgaaaac-atgatt-aaacctttgaaaaa 921
||||||||||||||||||| |||||| ||||||||||| |||||| ||||| ||||||||
Sbjct: 7503 attgagagtgtagagaaaaaggaaacggcattgaaaacaatgattaaaaccattgaaaaa 7444
Query: 922 gata 925
||||
Sbjct: 7443 gata 7440
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7204
Number of Sequences: 1807
Number of extensions: 7204
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 962
length of database: 10,358,551
effective HSP length: 16
effective length of query: 946
effective length of database: 10,329,639
effective search space: 9771838494
effective search space used: 9771838494
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)