BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC16ZG03FM1.SCF screened BAC_end (947 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1394 1302 0.0 >3x_Contig1394 Length = 5721 Score = 1302 bits (657), Expect = 0.0 Identities = 727/742 (97%), Gaps = 7/742 (0%) Strand = Plus / Plus Query: 85 ggaagattcagtagaggattgagaagaagaagaagaagaagaagaggaagattcttcttc 144 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1223 ggaagattcagtagaggattgagaagaagaagaagaagaagaagaggaagattcttcttc 1282 Query: 145 agaacttgaggttgaaggttccaatgtagtggtttgttgatcctcagtggacgaagtagt 204 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 1283 agaacttgaggttgaaggttccaaagtagtggtttgttgatcctcagtggacgaagtagt 1342 Query: 205 agctgctttnnctgngtaagtgacagtagctggagcaatggtttcaccctggccgttgac 264 |||||||| | | | ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1343 agctgcttcttcggtggaagtgacagtagctggagcaatggtttcaccctggccgttgac 1402 Query: 265 ggtaacggtttggtaaacatactcgacagcaacagctctcttgtgcttgtgatgagcatg 324 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1403 ggtaacggtttggtaaacatactcgacagcaacagctctcttgtgcttgtgatgagcatg 1462 Query: 325 gacggtagttgagcagtcctcatcacgcttagcatgagcatgaggcaaagcagataccat 384 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1463 gacggtagttgagcagtcctcatcacgcttagcatgagcatgaggcaaagcagataccat 1522 Query: 385 agctgcgctaataaaagaagcggaagctaaagcagtagtgaatctcatctttaaattagg 444 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1523 agctgcgctaataaaagaagcggaagctaaagcagtagtgaatctcatctttaaattagg 1582 Query: 445 cttttaaaaattaacaaaggagtgtattgagtttctgtattgaaaggaaaatgattaatt 504 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1583 cttttaaaaattaacaaaggagtgtattgagtttctgtattgaaaggaaaatgattaatt 1642 Query: 505 gttagtattagagaacgatgtcttttgaggttaggggggatgggatgagtggggaataga 564 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1643 gttagtattagagaacgatgtcttttgaggttaggggggatgggatgagtggggaataga 1702 Query: 565 cacaattccaatcgaattcgaatctgtgattgatacactggaaaagaacgtacaattgaa 624 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1703 cacaattccaatcgaattcgaatctgtgattgatacactggaaaagaacgtacaattgaa 1762 Query: 625 ggaaacagtgaaagtattctgcttttcctttaat-actgaat-tcaatgtcgctggtgct 682 |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| Sbjct: 1763 ggaaacagtgaaagtattctgcttttcctttaataactgaatatcaatgtcgctggtgct 1822 Query: 683 ttg-aaaaatgagtaggatgaaatgtgttttatattttaacaccgaaacaattctcgata 741 ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 1823 ttgaaaaaatgagtaggatgaaatgtgttttatatttcaacaccgaaacaattctcgata 1882 Query: 742 gaaggaaactagatggttgagtttgtctcgctta-aggcctcga-gatccagcctgaaa- 798 |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| Sbjct: 1883 gaaggaaactagatggttgagtttgtctcgcttataggcctcgaggatccagcctgaaag 1942 Query: 799 gtaaatc-aacatacaatttga 819 ||||||| |||||||||||||| Sbjct: 1943 gtaaatcaaacatacaatttga 1964 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9991 Number of Sequences: 1807 Number of extensions: 9991 Number of successful extensions: 692 Number of sequences better than 1.0e-20: 1 length of query: 947 length of database: 10,358,551 effective HSP length: 16 effective length of query: 931 effective length of database: 10,329,639 effective search space: 9616893909 effective search space used: 9616893909 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)