BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZG04RM1.SCF screened BAC_end
(918 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1159 1641 0.0
>3x_Contig1159
Length = 4873
Score = 1641 bits (828), Expect = 0.0
Identities = 867/876 (98%), Gaps = 3/876 (0%)
Strand = Plus / Minus
Query: 45 gcttgtatctttgatgaactcta-ttcacctcgtgtgaaatgtcaagctactttggcctt 103
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1475 gcttgtatctttgatgaactctacttcacctcgtgtgaaatgtcaagctactttggcctt 1416
Query: 104 gagaaacttagcttcagataccaactaccaattggagattgttagagctggtggattacc 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1415 gagaaacttagcttcagataccaactaccaattggagattgttagagctggtggattacc 1356
Query: 164 agacttggttcaattgattcagtcggattctttaccattagtcttggccagcgtcgcatg 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1355 agacttggttcaattgattcagtcggattctttaccattagtcttggccagcgtcgcatg 1296
Query: 224 tatcagaaatatttccatccatccattaaacgaaggtctaattgtagatgccggatttct 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1295 tatcagaaatatttccatccatccattaaacgaaggtctaattgtagatgccggatttct 1236
Query: 284 accacctttagtaaaattgcttgattaccaagaatcagaagaaattcaatgtcatgctgt 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1235 accacctttagtaaaattgcttgattaccaagaatcagaagaaattcaatgtcatgctgt 1176
Query: 344 ttcaactttaagaaacttggctgcttcatctgaaaaaaatagagcagagttcttccaatc 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1175 ttcaactttaagaaacttggctgcttcatctgaaaaaaatagagcagagttcttccaatc 1116
Query: 404 tggtgtaattgaaaaattcaagcaacttgccttgacatgtcccatcagcgttcaaagtga 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1115 tggtgtaattgaaaaattcaagcaacttgccttgacatgtcccatcagcgttcaaagtga 1056
Query: 464 aattagtgcttgctttgctatcttggcactttcagataatactaaatatgatcttttgca 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1055 aattagtgcttgctttgctatcttggcactttcagataatactaaatatgatcttttgca 996
Query: 524 acaagacgtactaaaagttttgatcccaatgacaatgtcccaggaccaagagatctctgg 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 995 acaagacgtactaaaagttttgatcccaatgacaatgtcccaggaccaagagatctctgg 936
Query: 584 taactctgctgctgctgtagcaaacttgatctctagggtcagcaatttagagaaaatatt 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 935 taactctgctgctgctgtagcaaacttgatctctagggtcagcaatttagagaaaatatt 876
Query: 644 ggagtactggggtcaaccaaacgatggtatcaagggtttcttgatcagattcttgtctag 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 ggagtactggggtcaaccaaacgatggtatcaagggtttcttgatcagattcttgtctag 816
Query: 704 tgacttccctacctatgaacatattgctctatggaccattttacaactatttgaatgtca 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 tgacttccctacctatgaacatattgctctatggaccattttacaactatttgaatgtca 756
Query: 764 caacgaaaccatttacaagtttaattaaaga-gatcaaaaactcgtcaacggggtcaaga 822
||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct: 755 caacgaaaccatttacaagtt-aattaaagaagatcaaaaactcgtcaacggggtcaaga 697
Query: 823 aaatcgctgatgaaaactacgctgtggctagggaatacatgccagatggacaagatacca 882
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 696 aaatcgctgatgaaaactacgctgtggctagggaatacatgcaagatggacaagatacca 637
Query: 883 acattgatcactatggaaaatcggacattttagaag 918
||||||||||| ||||||| ||| ||| | ||||||
Sbjct: 636 acattgatcacaatggaaattcgaacaatatagaag 601
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7878
Number of Sequences: 1807
Number of extensions: 7878
Number of successful extensions: 62
Number of sequences better than 1.0e-20: 1
length of query: 918
length of database: 10,358,551
effective HSP length: 16
effective length of query: 902
effective length of database: 10,329,639
effective search space: 9317334378
effective search space used: 9317334378
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)