BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZG05FM1.SCF screened BAC_end
(951 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1142 1618 0.0
>3x_Contig1142
Length = 5741
Score = 1618 bits (816), Expect = 0.0
Identities = 845/854 (98%), Gaps = 1/854 (0%)
Strand = Plus / Plus
Query: 87 gtatggtgaacatgagatcacaaaagcggctgagcttgctgctattgatactttgttaat 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1154 gtatggtgaacatgagatcacaaaagcggctgagcttgctgctattgatactttgttaat 1213
Query: 147 ttcagattcatggatgcggtcagatgatgttaatgttaggaaaaaatcattaaatcttat 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1214 ttcagattcatggatgcggtcagatgatgttaatgttaggaaaaaatcattaaatcttat 1273
Query: 207 caatgaagtggaacaaaccggtggtaaagcttatatcttcagttcactacacaatattgg 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1274 caatgaagtggaacaaaccggtggtaaagcttatatcttcagttcactacacaatattgg 1333
Query: 267 cgaagagttagatcgtctaaccgggctcgcttgtattttgaaatatccggttccagattt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1334 cgaagagttagatcgtctaaccgggctcgcttgtattttgaaatatccggttccagattt 1393
Query: 327 ggacgaagatattgatgaggaagaagaatgaagaggagtaaatgattttaattagaatat 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1394 ggacgaagatattgatgaggaagaagaatgaagaggagtaaatgattttaattagaatat 1453
Query: 387 aatggattcattggaatatactaaaataattcaattacatcatataaactaccttaatta 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1454 aatggattcattggaatatactaaaataattcaattacatcatataaactaccttaatta 1513
Query: 447 aaattataataaataaaaacagaaataaagaaaaaaaaataataaaagaaaataagaaca 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1514 aaattataataaataaaaacagaaataaagaaaaaaaaataataaaagaaaataagaaca 1573
Query: 507 aaaatgtaagaaaaataataataaaaatacactatcaagtagcgactttggcccaaacct 566
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1574 aaaatgtaagaaaaataataataaaaatacactatcaagtagcgactgtggcccaaaccg 1633
Query: 567 tatttgaatagttgtattaggtttgcattaatatattgcttacacatctgattgttaact 626
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1634 gagctgaatagttgtattaggtttgcattaatatattgcttacacatctgattgttaact 1693
Query: 627 aaatttcaagttttgaacaaaagagtcaaacttcttgcacgtgatttgatgtttttaaag 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1694 aaatttcaagttttgaacaaaagagtcaaacttcttgcacgtgatttgatgtttttaaag 1753
Query: 687 ttatccattttaatatttttattatttattttaaacttttctctatttttaagaagaaat 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1754 ttatccattttaatatttttattatttattttaaacttttctctatttttaagaagaaat 1813
Query: 747 atatattgnntttaatttattttgaaaaaatcatttttaaactatacttgagtataagaa 806
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1814 atatattg-ttttaatttattttgaaaaaatcatttttaaactatacttgagtataagaa 1872
Query: 807 tttattctaaaacaaaaattatttgttgctttatgtttccgaaaattattttattattta 866
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1873 tttattctaaaacaaaaattatttgttgctttatgtttccgaaaattattttattattta 1932
Query: 867 tgtgaattattattatgaaattgtcatgcantatatgttgatagatgtttgttactatta 926
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1933 tgtgaattattattatgaaattgtcatgcaatatatgttgatagatgtttgttactatta 1992
Query: 927 aataaatgattagc 940
||||||||| ||||
Sbjct: 1993 aataaatgaatagc 2006
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,321
Number of Sequences: 1807
Number of extensions: 13321
Number of successful extensions: 208
Number of sequences better than 1.0e-20: 1
length of query: 951
length of database: 10,358,551
effective HSP length: 16
effective length of query: 935
effective length of database: 10,329,639
effective search space: 9658212465
effective search space used: 9658212465
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)