BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZG05RM1.SCF screened BAC_end
(904 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig220 1074 0.0
>3x_Contig220
Length = 1055
Score = 1074 bits (542), Expect = 0.0
Identities = 575/584 (98%), Gaps = 2/584 (0%)
Strand = Plus / Plus
Query: 42 gcttcgttgcttctggttggncttcaactcatcatccccctcatctttccctacagtcga 101
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 461 gcttcgttgcttctggttggctgtcaactcatcatccccctcatctttccctacagtcga 520
Query: 102 ttcca-tatggctctgggagcagtgtattgtcctgtaagagaatgtcgctggcccgactt 160
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 ttccaatatggctctgggagcagtgtattgtcctgtaagagaatgtcgctggcccgactt 580
Query: 161 ttcgaacttgatagcttccattttaagtacagctgtttaataccaaactcggctttatca 220
||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 581 ttcgaacttgatagcttccattttaagtacagctgtttaataccaaactcggcaatagca 640
Query: 221 ataaagatcctgattggtgcttgcctttcagttatacctttcttccttttgattcaaagg 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 ataaagatcctgattggtgcttgcctttcagttatacctttcttccttttgattcaaagg 700
Query: 281 ttcttgacatcaaaattgttactaagttgtaactcgaatctttaattataaacacatata 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 ttcttgacatcaaaattgttactaagttgtaactcgaatctttaattataaacacatata 760
Query: 341 caaaacaaagaacgatacttctcaacagagaaaagaggatagtttagttaagaggccaga 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 caaaacaaagaacgatacttctcaacagagaaaagaggatagtttagttaagaggccaga 820
Query: 401 aaatagcctaacttttagaaaagtattatactctgggtccataccgcatgaggttacaaa 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 821 aaatagcctaacttttagaaaagtattatactctgggtccataccgcatgaggttacaaa 880
Query: 461 attggattccagttttgcttctagcagccatcgtgacggctgaagtaga-ctttgaagtt 519
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 881 attggattccagttttgcttctagcagccatcgtgacggctgaagtagagctttgaagtt 940
Query: 520 aatccagttgacaacgaaacagaatcagttcagcaagatgttatagatgaaagctggaat 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 941 aatccagttgacaacgaaacagaatcagttcagcaagatgttatagatgaaagctggaat 1000
Query: 580 gcagagcctgnggaatcatcgagaataacacagtcctcgaagtt 623
|||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1001 gcagagcctggggaatcatcgagaataacacagtcctcgaagtt 1044
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5991
Number of Sequences: 1807
Number of extensions: 5991
Number of successful extensions: 27
Number of sequences better than 1.0e-20: 1
length of query: 904
length of database: 10,358,551
effective HSP length: 16
effective length of query: 888
effective length of database: 10,329,639
effective search space: 9172719432
effective search space used: 9172719432
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)