BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZG06RM1.SCF screened BAC_end
(950 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1043 1637 0.0
>3x_Contig1043
Length = 5132
Score = 1637 bits (826), Expect = 0.0
Identities = 876/889 (98%), Gaps = 3/889 (0%)
Strand = Plus / Minus
Query: 39 aaaacctttttgatatgatatgggcgttgactggcataatcaaaattcccccattcccat 98
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 2761 aaaagctttttgatatgatatgggcgttgactggcataatcaaaattcccccatttccat 2702
Query: 99 tccgcaggtatcacattccagaaatcatccacctcttttgttattttcccaacagtagag 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2701 tccgcaggtatcacattccagaaatcatccacctcttttgttattttcccaacagtagag 2642
Query: 159 ttttctaaatcccatggaacctcagccgacctttttactctaccaccgtccatcatgtac 218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2641 ttttctaaatcccatggaacctcagccgacctttttactctaccaccgtccatcatgtac 2582
Query: 219 ttatttatggagccccataacgaatagcacttaatgaaggcggatctttcgttttggagt 278
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2581 tcatttatggagccccataacgaatagcacttaatgaaggcggatctttcgttttggagt 2522
Query: 279 aacaattgggggtaagctttgtaaaacttgttaaaagaaccaatggtgactttacttttc 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2521 aacaattgggggtaagctttgtaaaacttgttaaaagaaccaatggtgactttacttttc 2462
Query: 339 aactggatattgaaagcagcagccaattgggtattagaagcactgacttcttgttctatt 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2461 aactggatattgaaagcagcagccaattgggtattagaagcactgacttcttgttctatt 2402
Query: 399 ccaatatccgacgactgggagtttattttggataaaccatatacatcaccgtttaatgga 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2401 ccaatatccgacgactgggagtttattttggataaaccatatacatcaccgtttaatgga 2342
Query: 459 acatttgttttaccggtattgctaacaccggaaagcccaaagaaatatgattcaggaagt 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2341 acatttgttttaccggtattgctaacaccggaaagcccaaagaaatatgattcaggaagt 2282
Query: 519 ggtaattcaacgtccatgaatcgattgactgtaaaacaatgaccttcaccagtagaaata 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2281 ggtaattcaacgtccatgaatcgattgactgtaaaacaatgaccttcaccagtagaaata 2222
Query: 579 actctatccaagcaaaatgcggaccaaaaagttctattccgtagctcgttcaacaacggg 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2221 actctatccaagcaaaatgcggaccaaaaagttctattccgtagctcgttcaacaacggg 2162
Query: 639 tcttgtttacaactgtgttgaaacctttcgtcaaactgaattgcctgtatcatcctcaca 698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2161 tcttgtttacaactgtgttgaaacctttcgtcaaactgaattgcctgtatcatcctcaca 2102
Query: 699 gcacaaccatgcagcattcaggctgcaaaataatcattatgaccccatttgacacaagat 758
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2101 gcacaaccatgcagcatccaggctgcaaaataatcattatgaccccatttgacacaagat 2042
Query: 759 agtaagagaagcgattgacatatttcgatatcaggcttactgataaagtggcagttgtta 818
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2041 agtaagagaagcgattgacatatttcgatatcaggcttactgataaagtggcagttgtta 1982
Query: 819 aatattgcatccaaagncagcttctcataaagcgagtgtttcacttgaaaccaattgact 878
|||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1981 aatattgcatccaaagccagcttctcataaagcgagtgtttcacttgaaacgaattgac- 1923
Query: 879 tcttaacattttattctccgaaactgaaactctgatttcaaatcaggga 927
|| |||| ||||| ||||| ||||| ||||||||||||||||||||||
Sbjct: 1922 tcctaaccatttatcctccg-aactg-aactctgatttcaaatcaggga 1876
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7036
Number of Sequences: 1807
Number of extensions: 7036
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 950
length of database: 10,358,551
effective HSP length: 16
effective length of query: 934
effective length of database: 10,329,639
effective search space: 9647882826
effective search space used: 9647882826
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)