BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZG08FM1.SCF screened BAC_end
(951 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1068 854 0.0
3x_Contig244 525 e-149
>3x_Contig1068
Length = 5568
Score = 854 bits (431), Expect = 0.0
Identities = 434/435 (99%)
Strand = Plus / Minus
Query: 87 taactccaactgcaagcaataagaacacagaagggccaatcacgttagaagatcaagata 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 taactccaactgcaagcaataagaacacagaagggccaatcacgttagaagatcaagata 376
Query: 147 ttatcacagattctgatttggatatttaatcgcaggttgtgtttgtacaactgaccacta 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ttatcacagattctgatttggatatttaatcgcaggttgtgtttgtacaactgaccacta 316
Query: 207 cttaaatattattttctcaagcaacaagacgtatatttactacttccagaacacagttgt 266
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 cttaaatattatttcctcaagcaacaagacgtatatttactacttccagaacacagttgt 256
Query: 267 caccacatcgagtattttaaaaaaattcagctattgttgtacatgtttatcttcaattga 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 caccacatcgagtattttaaaaaaattcagctattgttgtacatgtttatcttcaattga 196
Query: 327 aatttaaactttcagataatgtagataaggttaataatgatatatctcatcatctcgagg 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 aatttaaactttcagataatgtagataaggttaataatgatatatctcatcatctcgagg 136
Query: 387 ggatacctgtgtttagttaggtaagacattttacatgaatccacattcagtaatgattct 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 ggatacctgtgtttagttaggtaagacattttacatgaatccacattcagtaatgattct 76
Query: 447 tttgatccttcaaaagataaaaaaacacacaaatcaagatgtaattgaaccatcacaact 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75 tttgatccttcaaaagataaaaaaacacacaaatcaagatgtaattgaaccatcacaact 16
Query: 507 gaacgtattcagaga 521
|||||||||||||||
Sbjct: 15 gaacgtattcagaga 1
>3x_Contig244
Length = 1487
Score = 525 bits (265), Expect = e-149
Identities = 323/336 (96%), Gaps = 5/336 (1%)
Strand = Plus / Minus
Query: 619 ctcatcctcttatataggaaagaccaataaaattttcagtttttccctgttactaaaatt 678
|||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1271 ctcagcctctgatataggaatgaccaataaaattttcagtttttccctgttactaaaatt 1212
Query: 679 caagaagcgacatttcgaaaagacaacagtgggaaatactatgagtt-aaaccgtgttag 737
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 1211 caagaagcgacatttcgaaaagacaacagtgggaaatacta-gagtttaaaccgtgttag 1153
Query: 738 ggttgataaagtggtctcaaaacagatttataccagtaaactaggcattcaacgt-aatt 796
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1152 ggttgataaagtggtctcaaaacagatttataccagtaaactaggcattcaacgttaatt 1093
Query: 797 cgtgggattt-accataatcttgacactcgtcgnctacagaaaacgaacgccgtacggca 855
|||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct: 1092 cgtgggatttcaccataatctgaacactcgtcgcctacagaaaacgaacgccgtacggca 1033
Query: 856 tcagcaacattcttgccttgtatattaccctaccgtgactttgttcaccagtttcttggc 915
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1032 tcagcaacaatcttgccttgtatattaccctaccgtgactttgttcaccagtttcttggc 973
Query: 916 catctcatcg-aacagcagcaacttgaaaaagagaa 950
|||||||||| |||||||||||||||||| ||||||
Sbjct: 972 catctcatcgaaacagcagcaacttgaaagagagaa 937
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7784
Number of Sequences: 1807
Number of extensions: 7784
Number of successful extensions: 63
Number of sequences better than 1.0e-20: 2
length of query: 951
length of database: 10,358,551
effective HSP length: 16
effective length of query: 935
effective length of database: 10,329,639
effective search space: 9658212465
effective search space used: 9658212465
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)