BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZG08RM1.SCF screened BAC_end
(912 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1665 1384 0.0
>3x_Contig1665
Length = 15710
Score = 1384 bits (698), Expect = 0.0
Identities = 761/777 (97%), Gaps = 5/777 (0%)
Strand = Plus / Minus
Query: 54 atgcgatgctgttctggttctagtcgaagctagttttttctgtcaaagacaaatactgga 113
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1029 atgcgatgcctttctggttctagtcgaagctagttttttctgtcaaagacaaatactgga 970
Query: 114 aattggttaaatgtaaagataaaaatacagaaatgttgaataggatagataggatgctat 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 969 aattggttaaatgtaaagataaaaatacagaaatgttgaataggatagataggatgctat 910
Query: 174 taggaacctacatttggttcttttgtagctagtaaagtacttaaagcaggtttatgaggc 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 909 taggaacctacatttggttcttttgtagctagtaaagtacttaaagcaggtttatgaggc 850
Query: 234 cattgaaatcataagtggcttacacagtttaattttagccatttgaaacagacataacac 293
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 849 cattgaaatcataagtggcttacacagcttaattttagccatttgaaacagacataacac 790
Query: 294 ccttacattacatattaattcgacatgtttttccaattacatgtcaaccaccatgaaaaa 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 ccttacattacatattaattcgacatgtttttccaattacatgtcaaccaccatgaaaaa 730
Query: 354 aaaaggaaaacaaaagtttgaatctgaaccttttctattgccgtgaaaacaatgaacaaa 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 aaaaggaaaacaaaagtttgaatctgaaccttttctattgccgtgaaaacaatgaacaaa 670
Query: 414 gcagacagataaccttgataaaagccaagcaaatccagcatatatcttaatacgttgagc 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 gcagacagataaccttgataaaagccaagcaaatccagcatatatcttaatacgttgagc 610
Query: 474 atcacaagcaaaattgcttgactttgtgtttttgtctttcctctcctggaccaataaata 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 atcacaagcaaaattgcttgactttgtgtttttgtctttcctctcctggaccaataaata 550
Query: 534 tcgaataaaagatgtcatatcaccaaccttcaattccctccattgatgcaaatagtaaca 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 tcgaataaaagatgtcatatcaccaaccttcaattccctccattgatgcaaatagtaaca 490
Query: 594 cgaacgggttttaccagccatcacaacagtattcgttccctcaaggatctatggcttttg 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 cgaacgggttttaccagccatcacaacagtattcgttccctcaaggatctatggcttttg 430
Query: 654 gaaatgggatgcagggatctggcatggatttcggtggcagtaaacctagtggtacgccag 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 gaaatgggatgcagggatctggcatggatttcggtggcagtaaacctagtggtacgccag 370
Query: 714 ctaattttacatatgagcagttgacaccagggtttttttaatgccttatctacccgtggg 773
||||||| ||| ||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 369 ctaatttcacaaatgagcagttgacacca-ggtctttttaatgccttatctacccgtggg 311
Query: 774 tatttatttcgaacctttttttgtttgaagaatttgggaaatcaattttaaccgtat 830
|||| | |||||||| || |||| |||||||||| || ||||||||| ||||||||
Sbjct: 310 tattca-ttcgaacc-ttctttgcttgaagaatt--gggaatcaatttcaaccgtat 258
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8816
Number of Sequences: 1807
Number of extensions: 8816
Number of successful extensions: 69
Number of sequences better than 1.0e-20: 1
length of query: 912
length of database: 10,358,551
effective HSP length: 16
effective length of query: 896
effective length of database: 10,329,639
effective search space: 9255356544
effective search space used: 9255356544
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)