BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZG09FM1.SCF screened BAC_end
(980 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig774 1120 0.0
3x_Contig1253 448 e-125
>3x_Contig774
Length = 2612
Score = 1120 bits (565), Expect = 0.0
Identities = 568/569 (99%)
Strand = Plus / Plus
Query: 84 tgatcctcaacttagaataacagtcgatgatgctctacaacatccgtatttgtccatctg 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2032 tgatcctcaacttagaataacagtcgatgatgctctacaacatccgtatttgtccatctg 2091
Query: 144 gcatgatcctgcagatgaaccgatatgtacagaaaagttcgatttttcttttgaaagtgt 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2092 gcatgatcctgcagatgaaccgatatgtacagaaaagttcgatttttcttttgaaagtgt 2151
Query: 204 caatgagattgaacatcttaaacaaatggtaattgacgaagtgaccgatttcaggcaata 263
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2152 caatgagattgaacaacttaaacaaatggtaattgacgaagtgaccgatttcaggcaata 2211
Query: 264 tgtgagattacccctcttacacgagcaacagcaacaacaggggaagacagacggtggttt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2212 tgtgagattacccctcttacacgagcaacagcaacaacaggggaagacagacggtggttt 2271
Query: 324 tgatgatcaaatacgagaagatcaacgcacatttcaagcgcagctagaagaacaagtgaa 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2272 tgatgatcaaatacgagaagatcaacgcacatttcaagcgcagctagaagaacaagtgaa 2331
Query: 384 caatggtagaactgcatctaacgttccatcgttcgatgagccgttttctagtcaaatgat 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2332 caatggtagaactgcatctaacgttccatcgttcgatgagccgttttctagtcaaatgat 2391
Query: 444 gggttccgcgtcacaacaagatcctcttgttggtattcattcggataatttaccaagcca 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2392 gggttccgcgtcacaacaagatcctcttgttggtattcattcggataatttaccaagcca 2451
Query: 504 tgaacttgacttccctcctaggcctagtgagaatgtgctagattcgccaatgggtctaag 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2452 tgaacttgacttccctcctaggcctagtgagaatgtgctagattcgccaatgggtctaag 2511
Query: 564 tcatcagcaaacgcataacggctctcctgagtgccaagatataaatgaccttttaggatt 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2512 tcatcagcaaacgcataacggctctcctgagtgccaagatataaatgaccttttaggatt 2571
Query: 624 agaaagagaactagaatttggattagata 652
|||||||||||||||||||||||||||||
Sbjct: 2572 agaaagagaactagaatttggattagata 2600
>3x_Contig1253
Length = 5628
Score = 448 bits (226), Expect = e-125
Identities = 285/296 (96%), Gaps = 7/296 (2%)
Strand = Plus / Plus
Query: 672 tctggtatatagcttcatccactctctttgtagaacataaattgttgctcagattctgct 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17 tctggtatatagcttcatccactctctttgtagaacataaattgttgctcagattctgct 76
Query: 732 atacgtgaaatgcctttgtac-aatttacacatcaaataac-atcattaaactggcagct 789
||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||
Sbjct: 77 atacgtgaaatgcctttgtacaaatttacacatcaaataacaatcataaaactggcagct 136
Query: 790 tcagtgaatacgaagatactcatgttctcatattctataaagaactgagatagtgtaatt 849
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 tcagtgaatacgaagatactcatgttctcatattctataaagaactgagatagtgtaatt 196
Query: 850 tgggttaatcgactacttttgaagcatatacaaatgtatcatacccgaattgncttgctg 909
| |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 197 t-ggttaatcgactacttttgaagcatatacaaatgtatcatacccgaattgtc-tgctg 254
Query: 910 aaacaagtgcagcttgcagactgtaaacagcncaaagttcatgccaattgatcaaa 965
||||||||||||| ||||||||||||||||| |||| ||||| ||||||||||||
Sbjct: 255 aaacaagtgcagc-tgcagactgtaaacagccaaaag-tcatg-caattgatcaaa 307
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6461
Number of Sequences: 1807
Number of extensions: 6461
Number of successful extensions: 90
Number of sequences better than 1.0e-20: 2
length of query: 980
length of database: 10,358,551
effective HSP length: 16
effective length of query: 964
effective length of database: 10,329,639
effective search space: 9957771996
effective search space used: 9957771996
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)