BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZG09RM1.SCF screened BAC_end
(948 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1253 1445 0.0
>3x_Contig1253
Length = 5628
Score = 1445 bits (729), Expect = 0.0
Identities = 820/845 (97%), Gaps = 4/845 (0%)
Strand = Plus / Minus
Query: 38 aaaacctttagagaattcggggaaagc-attgggagtcggcgttgccgatctctct-aca 95
|||| |||||||||||||||||||||| | |||||||||||||||| ||||| | |||
Sbjct: 1449 aaaagctttagagaattcggggaaagctacatggagtcggcgttgccgttctctttcaca 1390
Query: 96 gaatt-aataccttgaagttcatttcaagtttgagtgaccataaacctgctcctgttacg 154
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1389 gaattcaataccttgaagttcatttcaagtttgagtgaccataaacctgctcctgttacg 1330
Query: 155 gccgtggcagctaacaattataagccatacattgtcacaggttctgacgatggctttctg 214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1329 gccgtggcagctaacaattataagccatacattgtcacaggttctgacgatggctttctg 1270
Query: 215 aaaatctgggatttatcgaaaatagaaaaagggtctactttcattttcgtagtaaatcat 274
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1269 aaaatctgggatttatcgaaaatagaaaaagggtctactttcaagcccgtagtaaatcat 1210
Query: 275 gagctaggatcatccatcgttgatataactttcattgcgaattatgatgtgttcgtggtt 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1209 gagctaggatcatccatcgttgatataactttcattgcgaattatgatgtgttcgtggtt 1150
Query: 335 tcagcaaatgatggatccatcaatttgttcaaaataaacttcaaaaatcacataacgaac 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1149 tcagcaaatgatggatccatcaatttgttcaaaataaacttcaaaaatcacataacgaac 1090
Query: 395 cgcgaaatacaatgtatcgaaaatctacgacatttcacgtttaaagaagcaaaagaatat 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1089 cgcgaaatacaatgtatcgaaaatctacgacatttcacgtttaaagaagcaaaagaatat 1030
Query: 455 ggcacttctttatcgtacactaatgatgattcaaaaccttggataattactgtaactaac 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1029 ggcacttctttatcgtacactaatgatgattcaaaaccttggataattactgtaactaac 970
Query: 515 catggtcgtattgttatgttagatatcagagacatgtcagtcgtccatcaaatcgtaata 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 969 catggtcgtattgttatgttagatatcagagacatgtcagtcgtccatcaaatcgtaata 910
Query: 575 tcgcccgtgtatggttcagtttcaacttcgtctgttagttctgacggtcattggctacta 634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 909 tcgcccgtgtatggttcagtttcaacttcgtctgttagttctgacggtcattggctacta 850
Query: 635 tgtggaacaacacacggagcattacttctttggaatctcacatttaaaattttggtgaaa 694
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 tgtggaacaacacacggagcattacttctttggaatctcacatttaaaattttggtgaaa 790
Query: 695 tcttggtgttttggagatgaaagtcctattcgcaaggtcattctttttcaaaaggatagc 754
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 789 tcttggtgttttggagatgaaagtcctattcgcaaggtcattcttttccaaaaggatagc 730
Query: 755 agaaagaacgaatatagcgctatattgaccggtggaagttcttaatgtttattcacaata 814
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 729 agaaagaacgaatatagcgctatagtgaccggtggaagttctaaatgtttattcacaata 670
Query: 815 tggaatttgacaagactttaagttggaggaagtatttttttttttttacatggacacatt 874
|||||||||||||||||| ||| ||||||||||| ||| || | | ||||||||||||
Sbjct: 669 tggaatttgacaagacttcaag-tggaggaagtagtttcttcatctaacatggacacatc 611
Query: 875 aattg 879
|||||
Sbjct: 610 aattg 606
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,934
Number of Sequences: 1807
Number of extensions: 14934
Number of successful extensions: 193
Number of sequences better than 1.0e-20: 1
length of query: 948
length of database: 10,358,551
effective HSP length: 16
effective length of query: 932
effective length of database: 10,329,639
effective search space: 9627223548
effective search space used: 9627223548
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)