BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC16ZG11FM1.SCF screened BAC_end
         (949 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig88                                                          1164   0.0  

>3x_Contig88 
          Length = 1299

 Score = 1164 bits (587), Expect = 0.0
 Identities = 641/653 (98%), Gaps = 7/653 (1%)
 Strand = Plus / Minus

                                                                       
Query: 87  tagaaaaatggataacagctctatttgatcttactttgccgttcggaaattatgatttca 146
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 tagaaaaatggataacagctctatttgatcttactttgccgttcggaaattatgatttca 617

                                                                       
Query: 147 cttcgatcaaggttcccgaatttgtggcttgcattcctagcaccaatgatacaggtacaa 206
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 cttcgatcaaggttcccgaatttgtggcttgcattcctagcaccaatgatacaggtacaa 557

                                                                       
Query: 207 tcattgtcagacgacagagtaccttaaatgaaacccttatccctaaaacaattcgagatt 266
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 tcattgtcagacgacagagtaccttaaatgaaacccttatccctaaaacaattcgagatt 497

                                                                       
Query: 267 catccg--tgttaac-ct-caatatcatcc--attttgt-ccatcaaaagagcaacacca 319
           ||| ||  ||||| | || ||||||||| |  ||||||| ||||||||||||||||||||
Sbjct: 496 catgcgcgtgttagcgctgcaatatcatgcgcattttgtgccatcaaaagagcaacacca 437

                                                                       
Query: 320 aatgaattaaatttggtgttgcaattagataaaagaaagactaatgaagataatatcgtc 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 aatgaattaaatttggtgttgcaattagataaaagaaagactaatgaagataatatcgtc 377

                                                                       
Query: 380 tcgatcaagaacgtcattttagctttgacttggaagttttctacttttaactgctgtatt 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 tcgatcaagaacgtcattttagctttgacttggaagttttctacttttaactgctgtatt 317

                                                                       
Query: 440 gttgatgttgaaggaatggtcatcaattgcggaactgctaacgatgttctcaattcgttg 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 gttgatgttgaaggaatggtcatcaattgcggaactgctaacgatgttctcaattcgttg 257

                                                                       
Query: 500 gctggtccgataaaaagtaatggtaatcaaccattctctccagatcttttacaccaatta 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 gctggtccgataaaaagtaatggtaatcaaccattctctccagatcttttacaccaatta 197

                                                                       
Query: 560 tggtatcggcaaaaacagaaaatatgcaaaaatgttggggttgttgttttatcaaactca 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 tggtatcggcaaaaacagaaaatatgcaaaaatgttggggttgttgttttatcaaactca 137

                                                                       
Query: 620 tccatggagaatggtaaatcatgtctttttagcgattatcgaatattcgctgatgcaggc 679
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 tccatggagaatggtaaatcatgtctttttagcgattatcgaatattcgctgatgcaggc 77

                                                                
Query: 680 aaacggcatccaaatgaattaaaaataaaagtaggctttctgaatgtagatta 732
           |||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct: 76  aaacggcatccaaatgaatttaatataaaagtaggctttctgaatgtagatta 24


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7526
Number of Sequences: 1807
Number of extensions: 7526
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 949
length of database: 10,358,551
effective HSP length: 16
effective length of query: 933
effective length of database: 10,329,639
effective search space: 9637553187
effective search space used: 9637553187
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)