BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZG11RM1.SCF screened BAC_end
(914 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1315 1419 0.0
>3x_Contig1315
Length = 8846
Score = 1419 bits (716), Expect = 0.0
Identities = 769/783 (98%), Gaps = 3/783 (0%)
Strand = Plus / Plus
Query: 48 tacgtgttttagtgtttggaagttaaaataatgaaaaacctatacgttataaaaacaatt 107
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 4947 tacgtgttttagtgtttggaagttaaaataatgaaaaacctctaagttataaaaacaatt 5006
Query: 108 aaccgcaataacaaaaattcaaacaatgagtagcaattaaccacagaaacgtcaaaaaaa 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5007 aaccgcaataacaaaaattcaaacaatgagtagcaattaaccacagaaacgtcaaaaaaa 5066
Query: 168 agtaatcacaatcttacttattctaaagaatacaagatctgattccttacttatattttg 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5067 agtaatcacaatcttacttattctaaagaatacaagatctgattccttacttatattttg 5126
Query: 228 ttgacacacttatttcgtttcgagttccatttttattttttgtgatttttcgtctttttc 287
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 5127 ttgacacacttatttcgtttcgagttccatttttagtttttgtgatttttcgtctttttc 5186
Query: 288 atcgaaatcgaaaaagggacacagatcatcaccaaatcagggtaatgttgaaaattcttt 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5187 atcgaaatcgaaaaagggacacagatcatcaccaaatcagggtaatgttgaaaattcttt 5246
Query: 348 cttataatccaattcgtcaataccaatttgaattgacgaagttcaaacagagttagacga 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5247 cttataatccaattcgtcaataccaatttgaattgacgaagttcaaacagagttagacga 5306
Query: 408 gcgacctagagaaactagtatctgtccctatcgattgaacttatcctttctcctcttcat 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5307 gcgacctagagaaactagtatctgtccctatcgattgaacttatcctttctcctcttcat 5366
Query: 468 catagtatcataccagcagcgaaaataattagaggatgtcttttggagctgtaacggaat 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5367 catagtatcataccagcagcgaaaataattagaggatgtcttttggagctgtaacggaat 5426
Query: 528 cttntagcagagtgttgctggaaacagcgacatcaatattgcctcgttggagcactccag 587
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5427 cttttagcagagtgttgctggaaacagcgacatcaatattgcctcgttggagcactccag 5486
Query: 588 cagctggtactgcattgccacagaaactgctggaattgcttgaaagaaaccaacgtgaaa 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5487 cagctggtactgcattgccacagaaactgctggaattgcttgaaagaaaccaacgtgaaa 5546
Query: 648 agtcttcacctcaagcggattactttacgaataacgggnatccttctagctgtgccccag 707
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct: 5547 agtcttcacctcaagcggattactttacgaataacggg-atccttctagctgtgcccaag 5605
Query: 708 tatgaaagtgtcgcatcagaagaagagacaaaagttatatgcgcctgtagacaaacagct 767
| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 5606 -aagaaagtgtcgcatcagaagaagagacaaaagttatatgcgcctggagacaaacagct 5664
Query: 768 gaaaatgatcaaccatttgaacaaatgccttttatgtgggcatttacagaaaggcacata 827
||||||||||||||||||||||||||||| || ||||||||| ||||| ||||||||||
Sbjct: 5665 gaaaatgatcaaccatttgaacaaatgcccttcatgtgggca-ttacaagaaggcacata 5723
Query: 828 cgc 830
|||
Sbjct: 5724 cgc 5726
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7794
Number of Sequences: 1807
Number of extensions: 7794
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 914
length of database: 10,358,551
effective HSP length: 16
effective length of query: 898
effective length of database: 10,329,639
effective search space: 9276015822
effective search space used: 9276015822
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)