BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZG12FM1.SCF screened BAC_end
(947 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1642 1463 0.0
>3x_Contig1642
Length = 16641
Score = 1463 bits (738), Expect = 0.0
Identities = 838/865 (96%), Gaps = 5/865 (0%)
Strand = Plus / Minus
Query: 82 tgagcgaagtgattttctgtttaaagttccaacgaaatcagaggcaaccagttggttgaa 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12559 tgagcgaagtgattttctgtttaaagttccaacgaaatcagaggcaaccagttggttgaa 12500
Query: 142 gttaagtcccaaatcagagtgatttgcatcaaggatttgaagagctcgttttgtttctga 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12499 gttaagtcccaaatcagagtgatttgcatcaaggatttgaagagctcgttttgtttctga 12440
Query: 202 atcagatgtgtaactcgcataattgggaacattcaataagctgttaatcttcttggataa 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12439 atcagatgtgtaactcgcataattgggaacattcaataagctgttaatcttcttggataa 12380
Query: 262 aagttggtttgtagttgtaggtttctcgatgttatttgatataggagctgcgacctcctt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12379 aagttggtttgtagttgtaggtttctcgatgttatttgatataggagctgcgacctcctt 12320
Query: 322 cgataaagagacggacgcagggcgtatttcaccgagggaaatgctggcaaaatgtttcat 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12319 cgataaagagacggacgcagggcgtatttcaccgagggaaatgctggcaaaatgtttcat 12260
Query: 382 cttgctgtgaagatcggtaaactcggtgtcatgcttgctgacattcggtagaacgaattt 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12259 cttgctgtgaagatcggtaaactcggtgtcatgcttgctgacattcggtagaacgaattt 12200
Query: 442 ggcctcttgttcatcgtcattcaatctcaagcttgccaacgaaagacgtgacgctggttg 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12199 ggcctcttgttcatcgtcattcaatctcaagcttgccaacgaaagacgtgacgctggttg 12140
Query: 502 aggtaatgcagcagactcgtccactaccagtgccggaaaatctagaaagtccattacaga 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12139 aggtaatgcagcagactcgtccactaccagtgccggaaaatctagaaagtccattacaga 12080
Query: 562 tatgagatctgctatttataattgagtgcaatgattagttagtatgtcagaatcctgatt 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12079 tatgagatctgctatttataattgagtgcaatgattagttagtatgtcagaatcctgatt 12020
Query: 622 tcgcgagtagtttaatgtctctttaatacaatttgtatgactttctatttcgaaaaatga 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12019 tcgcgagtagtttaatgtctctttaatacaatttgtatgactttctatttcgaaaaatga 11960
Query: 682 aagatttangtttttcgtatttattgaatcggtttatatatggtatgtgtgtaattgagt 741
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11959 aagatttaggtttttcgtatttattgaatcggtttatatatggtatgtgtgtaattgagt 11900
Query: 742 attgtacaatttcaaacattaacaaagtaaagattatttttgtttgaatcttacaccagt 801
||||||||||| |||||| |||||||||||||||||| |||||||||||| ||||||
Sbjct: 11899 attgtacaattcaaaacataaacaaagtaaagattattattgtttgaatctaccaccag- 11841
Query: 802 tggagactacgtacctaattaaaattaaggacaataagcatcttatattttgaatgaaaa 861
||||||||||||||||||||||||| | |||||||||||||| |||| | ||||||||||
Sbjct: 11840 tggagactacgtacctaattaaaataagggacaataagcatc-tatagtatgaatgaaaa 11782
Query: 862 aaaatgaggttattctttcatatcagnaacctggttcttacaaaggattggattaaattt 921
||| ||||| ||||||| ||||||| ||||||||||| ||||| || | || |||| |
Sbjct: 11781 aaagtgagg-tattcttcaatatcag-aacctggttctaacaaa-gaatagaataaagta 11725
Query: 922 atttaagttggaaaggcccctgtca 946
|||||||||| ||||||| ||||||
Sbjct: 11724 atttaagttgaaaaggccactgtca 11700
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7335
Number of Sequences: 1807
Number of extensions: 7335
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 947
length of database: 10,358,551
effective HSP length: 16
effective length of query: 931
effective length of database: 10,329,639
effective search space: 9616893909
effective search space used: 9616893909
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)