BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZG12RM1.SCF screened BAC_end
(950 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig927 803 0.0
3x_Contig1262 363 e-100
>3x_Contig927
Length = 3708
Score = 803 bits (405), Expect = 0.0
Identities = 438/449 (97%)
Strand = Plus / Plus
Query: 38 ctttgatccaaggtaacacagaaatcgttgaattggtatatcaaaacactcagcagtttg 97
|||||||||||||||||||||| |||| |||||||||||||||||||||| |||||||||
Sbjct: 3250 ctttgatccaaggtaacacagatatcgctgaattggtatatcaaaacactaagcagtttg 3309
Query: 98 ataaactgtctttcctatatctacttaagggagacaactccaaactggcaaaaatggagt 157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3310 ataaactgtctttcctatatctacttaagggagacaactccaaactggcaaaaatggagt 3369
Query: 158 ctattgctgaacatagatcagatatttccggcttgattcaaaataccttttacatttttt 217
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 3370 ctattgctgaacatagatcagatatttccggcttgattcaaaataccttttacaataact 3429
Query: 218 cagttcagaagcgtgcaaatgtctttttaaatgcaggtttttttcctttggcttatgcag 277
||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||
Sbjct: 3430 cagttcagaagcgtgcaaatgtctttttaaatgcaggctctgctcctttggcttatgcag 3489
Query: 278 tggcaaaagctaacggcgacgatgaccttgccacttccattttggaatccgaagaaattg 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3490 tggcaaaagctaacggcgacgatgaccttgccacttccattttggaatccgaagaaattg 3549
Query: 338 atgagcaagacatttccctaccaactgaactcaactcctccacaaatgtaaaaacccctg 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3550 atgagcaagacatttccctaccaactgaactcaactcctccacaaatgtaaaaacccctg 3609
Query: 398 tcatttctgctcctttgaaaaactggccgttaaagcaagctgaagtctcattctttgaaa 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3610 tcatttctgctcctttgaaaaactggccgttaaagcaagctgaagtctcattctttgaaa 3669
Query: 458 aagcccttttgggccaaatcgaagatctt 486
|||||||||||||||||||||||||||||
Sbjct: 3670 aagcccttttgggccaaatcgaagatctt 3698
>3x_Contig1262
Length = 7137
Score = 363 bits (183), Expect = e-100
Identities = 296/326 (90%), Gaps = 6/326 (1%)
Strand = Plus / Plus
Query: 597 ggaagaagatgcttgggacctagacc-aaaatgatttggaattagacgacgagttagaga 655
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1 ggaagaagatgcttgggacctagacccaaaatgatttggaattagacgacgagttagaga 60
Query: 656 tcgaagaatccgaagtgactgaagaacaagtagatgaatcagaattgccaatgtgggtta 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tcgaagaatccgaagtgactgaagaacaagtagatgaatcagaattgccaatgtgggtta 120
Query: 716 aaaattcaaagcttccagcatttttagtagccgctgaagcctttgatgcttgttgccaag 775
|||||||||||||||||||| || |||||||||||| ||||||||||||| | |||||
Sbjct: 121 aaaattcaaagcttccagcagttctagtagccgctggagcctttgatgctgctgcccaag 180
Query: 776 ccttgaatatacangttgctctttgtaaacttttgaacccctcaagacaccatttcattg 835
||||||||| || || || | |||||||| || |||||||||| ||||||| |||||||
Sbjct: 181 ccttgaataagcaggtagc-cgttgtaaac-ttcgaacccctcaggacacca-ttcattg 237
Query: 836 atatttaccattggtgcaagaacttatttgattgtctcaccaaatgaattaccttcaata 895
|||| ||| | |||||||||||||||| ||| || ||||||||||||||||||||||
Sbjct: 238 atatatacga-tggtgcaagaacttatatgagtgctacaccaaatgaattaccttcaatt 296
Query: 896 attgtatacaccccgagctgatgccg 921
|||| ||||| ||||||||||||||
Sbjct: 297 attggataca-tccgagctgatgccg 321
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8776
Number of Sequences: 1807
Number of extensions: 8776
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 2
length of query: 950
length of database: 10,358,551
effective HSP length: 16
effective length of query: 934
effective length of database: 10,329,639
effective search space: 9647882826
effective search space used: 9647882826
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)