BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZH01RM1.SCF screened BAC_end
(919 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1789 1544 0.0
>3x_Contig1789
Length = 30977
Score = 1544 bits (779), Expect = 0.0
Identities = 827/842 (98%), Gaps = 1/842 (0%)
Strand = Plus / Minus
Query: 47 taaagaagcaggacatagttttgatcccatgcgatgagcttcaaactagaacagaatact 106
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1948 taaagaagcaggacatagtta-gatcccatgcgatgagcttcaaactagaacagaatact 1890
Query: 107 tgctggtttcaggcgtttcatctctggtttttgctattttaaataattttgaactttaat 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1889 tgctggtttcaggcgtttcatctctggtttttgctattttaaataattttgaactttaat 1830
Query: 167 tcgatacgtgctctaaaaaaaggctaggaactgtaatatcatggctagagtaagaggtag 226
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1829 tcgatacgtgctctaaaaacaggctaggaactgtaatatcatggctagagtaagaggtag 1770
Query: 227 aaagctaataaaaaagctcaagaaagatgagttccatccagaagacaataaaacccatga 286
||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1769 aaagctaataacacagctcaagacagatgagttccatccagaagacaataaaacccatga 1710
Query: 287 tgagcctacggttagccatgttaatgaaactgctgggggtgacaatagtgatgtgagtcc 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1709 tgagcctacggttagccatgttaatgaaactgctgggggtgacaatagtgatgtgagtcc 1650
Query: 347 taatactttctttggtgtcctagattctggcgaattggattattttaagaaggctgaatc 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1649 taatactttctttggtgtcctagattctggcgaattggattattttaagaaggctgaatc 1590
Query: 407 cacgttggctattgatacatttgagaatccagatgagaagtaccagtttatcaacagtgt 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1589 cacgttggctattgatacatttgagaatccagatgagaagtaccagtttatcaacagtgt 1530
Query: 467 catcgaggaaagtaagggtaaagagttgaaacttgctacgtctcagatttcttctaagct 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1529 catcgaggaaagtaagggtaaagagttgaaacttgctacgtctcagatttcttctaagct 1470
Query: 527 aatggaacgtattattatggaaagtgatgaaactcaattgaagactatcttcaaagcttt 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1469 aatggaacgtattattatggaaagtgatgaaactcaattgaagactatcttcaaagcttt 1410
Query: 587 caatgggttttatttcaaccttgcatgtcacaaatattcctcccatgttttagagactct 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1409 caatgggttttatttcaaccttgcatgtcacaaatattcctcccatgttttagagactct 1350
Query: 647 attagtcagaggtgcagcacaggtggaaaaagaattgttaacacctgattttgattctgn 706
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1349 attagtcagaggtgcagcacaggtggaaaaagaattgttaacacctgattttgattctgt 1290
Query: 707 tgatgagggtgaattcgttactactgaatcattgtttttgtttttgactaacgagttgca 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1289 tgatgagggtgaattcgttactactgaatcattgtttttgtttttgactaacgagttgca 1230
Query: 767 accgaacttaatgttcatggtgagccatcaatattcatcacatgttcttagaattttaat 826
||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct: 1229 accgaacttaaggttcatggtgagccatcaatatgcatcacatgtccttagaattttaat 1170
Query: 827 tttagtgctatcgtcaaagattttaccaagtactgtacataacaattaaccattacgttc 886
||||||||||||||||||| |||||||||||||||||| ||||||| | ||||||||||
Sbjct: 1169 cttagtgctatcgtcaaagactttaccaagtactgtacagaacaattcaacattacgttc 1110
Query: 887 ca 888
||
Sbjct: 1109 ca 1108
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7429
Number of Sequences: 1807
Number of extensions: 7429
Number of successful extensions: 66
Number of sequences better than 1.0e-20: 1
length of query: 919
length of database: 10,358,551
effective HSP length: 16
effective length of query: 903
effective length of database: 10,329,639
effective search space: 9327664017
effective search space used: 9327664017
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)