BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZH02FM1.SCF screened BAC_end
(931 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1301 1542 0.0
>3x_Contig1301
Length = 6951
Score = 1542 bits (778), Expect = 0.0
Identities = 835/849 (98%), Gaps = 4/849 (0%)
Strand = Plus / Minus
Query: 84 ttgataaaggctttttaatagctcatcagcagcatccaatttatcagattggttcccttc 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3376 ttgataaaggctttttaatagctcatcagcagcatccaatttatcagattggttcccttc 3317
Query: 144 ctctttagtatcaacaaccttaatatctgcagcagaaaaaatattctttgagctgcctga 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3316 ctctttagtatcaacaaccttaatatctgcagcagaaaaaatattctttgagctgcctga 3257
Query: 204 gccatagtgagttttttgttccttggaaactagagacttcaatatatcccaagtaccaac 263
|||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3256 gccatagtgagtcttcggttccttggaaactagagacttcaatatatcccaagtaccaac 3197
Query: 264 atttttcactatagggtatgagtttacacgatagattagccgtctagttattccaaacat 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3196 atttttcactatagggtatgagtttacacgatagattagccgtctagttattccaaacat 3137
Query: 324 tatcaattttctgacatcaattcgattatccctaattatttcgaagttttgcttgtacca 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3136 tatcaattttctgacatcaattcgattatccctaattatttcgaagttttgcttgtacca 3077
Query: 384 atctttgactgttttaccctgtgacaatgatttataaagatcgaataaacaacttctggt 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3076 atctttgactgttttaccctgtgacaatgatttataaagatcgaataaacaacttctggt 3017
Query: 444 tggcagtattcttttcatttgattctctccagttgcaagactagtgttctctgaagcatg 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3016 tggcagtattcttttcatttgattctctccagttgcaagactagtgttctctgaagcatg 2957
Query: 504 ggccctgaaatacgacgaagtggacgacgaagataagtagtttctgtgtgtatccctaac 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2956 ggccctgaaatacgacgaagtggacgacgaagataagtagtttctgtgtgtatccctaac 2897
Query: 564 agagctagtggaaccggtagtagcagtatcattcgaatcacgtctccttgaatgaacagt 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2896 agagctagtggaaccggtagtagcagtatcattcgaatcacgtctccttgaatgaacagt 2837
Query: 624 acttgttgaagcttgttntcttccagttggatatatattattaggcctaccttcgaatgg 683
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2836 acttgttgaagcttgttttcttccagttggatatatattattaggcctaccttcgaatgg 2777
Query: 684 taatagactttgctttagactatcaccctgaacaaaaagttgacaggcttttggctacag 743
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 2776 taatagactttgctttagactatcaccctgaacaaaaagttgacaggc-tttggctacag 2718
Query: 744 ccggattcgttaagaagttatgaatctcactagtgggagcataaatgttgcttaaattg- 802
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 2717 ccggattcgttaagaagttatgaatctcactagtgggagcataaatgttgc-taaattga 2659
Query: 803 aaaatatcggagagaattacacagttgtagtacatcaaatgttttatgcattcttgaact 862
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 2658 aaaatatcggagagaataacacagttgtagtacatcaaatgtttaatgcattcttgaact 2599
Query: 863 aattc-acattacttcgagcactgacttgcatttgagctacgctattaattccattgata 921
||||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 2598 aattcaacatcacttcgagcactgactgcaatttgagctacgctattaattccattgata 2539
Query: 922 tacggtaca 930
|||||||||
Sbjct: 2538 tacggtaca 2530
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6565
Number of Sequences: 1807
Number of extensions: 6565
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 931
length of database: 10,358,551
effective HSP length: 16
effective length of query: 915
effective length of database: 10,329,639
effective search space: 9451619685
effective search space used: 9451619685
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)