BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZH03FM1.SCF screened BAC_end
(979 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1338 1616 0.0
>3x_Contig1338
Length = 8134
Score = 1616 bits (815), Expect = 0.0
Identities = 861/871 (98%), Gaps = 4/871 (0%)
Strand = Plus / Minus
Query: 86 tcaaagttgatttttgcaatttctcatcataaacagcggtcaatctggcaatacctttac 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1075 tcaaagttgatttttgcaatttctcatcataaacagcggtcaatctggcaatacctttac 1016
Query: 146 cactacccaatttattttcaaaagtgtaataaacttgaacccattccacaggaggtctac 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1015 cactacccaatttattttcaaaagtgtaataaacttgaacccattccacaggaggtctac 956
Query: 206 ctgattttggttcatgcttcaacaccttaccgtaaccggaagtgtatctataatcggcca 265
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 955 ctgattttggttcatgcatcaacaccttaccgtaaccggaagtgtatctataatcggcca 896
Query: 266 atttatccaattggaaattggacaatttagccttggacaatagcggttgtaaatcgtttg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 895 atttatccaattggaaattggacaatttagccttggacaatagcggttgtaaatcgtttg 836
Query: 326 acaagttttccaaaccgatgaaagaatgtaaatcaaaagtgacacctaaatgatctctcc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 acaagttttccaaaccgatgaaagaatgtaaatcaaaagtgacacctaaatgatctctcc 776
Query: 386 aggtaccgtggtttccaaacaaccgagaccagtcttcttctgaaaccgatgtggaaccgg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 aggtaccgtggtttccaaacaaccgagaccagtcttcttctgaaaccgatgtggaaccgg 716
Query: 446 aattgatcttattcatcaaaacattgaattgttcgaaccattcgtcaaccaatggtccga 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 aattgatcttattcatcaaaacattgaattgttcgaaccattcgtcaaccaatggtccga 656
Query: 506 tcttggattcatcagcaatcaactctggagaagcagtaacattaacaccgtacactttct 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 tcttggattcatcagcaatcaactctggagaagcagtaacattaacaccgtacactttct 596
Query: 566 ctaatggtaaatcatcggaaacagcttcgtgaagaattggagggtaaacttccttattgt 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 ctaatggtaaatcatcggaaacagcttcgtgaagaattggagggtaaacttccttattgt 536
Query: 626 agaaatcttcctcgtgtagtattttcttcatatcctggacattttccgcttctggaaaag 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 agaaatcttcctcgtgtagtattttcttcatatcctggacattttccgcttctggaaaag 476
Query: 686 taccttcagaagatttagtttgtttcaaagcgtgagcgacaccgtcaagtgtattattca 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 taccttcagaagatttagtttgtttcaaagcgtgagcgacaccgtcaagtgtattattca 416
Query: 746 aaccgacagtcgcgacaggagccatatttaatgtgtttgcgtataccttttttttatttc 805
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 415 aaccgacagtcgcgacaggagccataattaatgtgtttgcgtataccttttttttatttc 356
Query: 806 accctaataaaggagttattgtttgtttgtttgtttgtttggttggttggtagggatgta 865
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 accctaataaaggagttattgtttgtttgtttgtttgtttggttggttggtagggatgta 296
Query: 866 gatatgatgaatacaataaattggaatggnagttgagatggacatttggtttcagnataa 925
||||||||||||||||||||||||||||| || ||||||||||| |||||| ||| || |
Sbjct: 295 gatatgatgaatacaataaattggaatgg-ag-tgagatggacaattggttacag-atga 239
Query: 926 aacccatctatttattacattttttttctat 956
|||||||||||||| |||| |||||||||||
Sbjct: 238 aacccatctattta-tacaatttttttctat 209
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8742
Number of Sequences: 1807
Number of extensions: 8742
Number of successful extensions: 109
Number of sequences better than 1.0e-20: 1
length of query: 979
length of database: 10,358,551
effective HSP length: 16
effective length of query: 963
effective length of database: 10,329,639
effective search space: 9947442357
effective search space used: 9947442357
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)