BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZH03RM1.SCF screened BAC_end
(955 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig736 1501 0.0
>3x_Contig736
Length = 1930
Score = 1501 bits (757), Expect = 0.0
Identities = 846/865 (97%), Gaps = 8/865 (0%)
Strand = Plus / Plus
Query: 46 gcttctaccaatttaacgagtcgattattgaccatggttctaataaaccacagaggatag 105
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 128 gcttctaccaatttaacgagtcgattaatgaccatggttctaataaaccacagaggatag 187
Query: 106 ttaagaattggggctctaagttgacccagctgaaaccaaggggtttactcaaccatggtg 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ttaagaattggggctctaagttgacccagctgaaaccaaggggtttactcaaccatggtg 247
Query: 166 tcacatgttacacaaacgctgctgtgcaagccatggttcatattccagcaattcaacact 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tcacatgttacacaaacgctgctgtgcaagccatggttcatattccagcaattcaacact 307
Query: 226 atttatttcaattactacgtggaaatttcaaggacaccgttaagtctaactgtgtttcca 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 atttatttcaattactacgtggaaatttcaaggacaccgttaagtctaactgtgtttcca 367
Query: 286 tgttattagcggaaactacgatgagaatgtggtcttctgactcaactaaaaatacgtaca 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 tgttattagcggaaactacgatgagaatgtggtcttctgactcaactaaaaatacgtaca 427
Query: 346 ttaatcctgataaattaatcaatgcgttggaagacattaactgtatgatgagcgcttgga 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 ttaatcctgataaattaatcaatgcgttggaagacattaactgtatgatgagcgcttgga 487
Query: 406 accaagaggactctcacgaatattttatgtctttaatgtcacgtttacaagaggactcgg 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 accaagaggactctcacgaatattttatgtctttaatgtcacgtttacaagaggactcgg 547
Query: 466 ttcctaagggccataaaatgacagaatccatcatttacgatgtattcggtggattactac 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 ttcctaagggccataaaatgacagaatccatcatttacgatgtattcggtggattactac 607
Query: 526 aacaatcagttaaatgcagtaactgtggtgagatttcaaccactgaacaacctatatacg 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 aacaatcagttaaatgcagtaactgtggtgagatttcaaccactgaacaacctatatacg 667
Query: 586 atctttcattgcatttaaagggtagaaagacaactgatcaagatcaaaactctgttggtc 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 atctttcattgcatttaaagggtagaaagacaactgatcaagatcaaaactctgttggtc 727
Query: 646 aagataattcaattgataactctgttgatcaacagcaatcttcaaagagaaggttttcaa 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 aagataattcaattgataactctgttgatcaacagcaatcttcaaagagaaggttttcaa 787
Query: 706 ttgaaaaatctatttcggatttcttcaatcctgagtttat-aaaagagtggacaacacag 764
|||||||||||||| ||||||||||||||||||||| || |||||||||||||||| ||
Sbjct: 788 ttgaaaaatctattcgggatttcttcaatcctgagttaatcaaaagagtggacaacaaag 847
Query: 765 aatggtatacattgtgag-aatgtaagaaagttactaacgcgcttaaagt-aaacaagat 822
|| |||||||| |||||| |||||||||||||||||||||||| |||||| |||||||||
Sbjct: 848 aagggtataca-tgtgagaaatgtaagaaagttactaacgcgc-taaagtcaaacaagat 905
Query: 823 tattcgtgcttccagagacttttagtggtttatttaaaaaagttcagatttaatggccca 882
||||||||| ||||||||| | |||||||| |||||||||||||||||||||||||| ||
Sbjct: 906 tattcgtgc-tccagagac-tctagtggttcatttaaaaaagttcagatttaatggcaca 963
Query: 883 tcttttatccaaaatgaaacaggcc 907
|| || |||||||||||| ||||||
Sbjct: 964 tc-ttcatccaaaatgaagcaggcc 987
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7091
Number of Sequences: 1807
Number of extensions: 7091
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 1
length of query: 955
length of database: 10,358,551
effective HSP length: 16
effective length of query: 939
effective length of database: 10,329,639
effective search space: 9699531021
effective search space used: 9699531021
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)