BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZH05RM1.SCF screened BAC_end
(937 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig247 1505 0.0
>3x_Contig247
Length = 997
Score = 1505 bits (759), Expect = 0.0
Identities = 858/883 (97%), Gaps = 6/883 (0%)
Strand = Plus / Minus
Query: 45 cttaccttatcaaaattgatggattttgagttccgatccctcgccgtaatatttcataac 104
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 910 cttaccttatcaaaattgatggatattgagttccgatccctcgccgtaatatttcataac 851
Query: 105 tttaaaattcccttccttcgagcgatatgtttcgaatttccgttggaatcttccacgtct 164
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 850 tttgaaattcccttccttcgagcgatatgtttcgaatttccgttggaatcttccacgtct 791
Query: 165 ccagtgttttagggttgttctcgcgcatacaattttaaaaaaaaaaaagtgaggccactg 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 ccagtgttttagggttgttctcgcgcatacaattttaaaaaaaaaaaagtgaggccactg 731
Query: 225 atatcactacatgagatacagagacgggatcatgacagtttcttcaagtatgattcatta 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 atatcactacatgagatacagagacgggatcatgacagtttcttcaagtatgattcatta 671
Query: 285 tcggggattttgttgcggtcgtcaaaactgtaatataaacgggctgaaagattcatatat 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 tcggggattttgttgcggtcgtcaaaactgtaatataaacgggctgaaagattcatatat 611
Query: 345 aaactctttaagatcaattcacttatatctggcaaatttcagttcgaaaactaaaagata 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 aaactctttaagatcaattcacttatatctggcaaatttcagttcgaaaactaaaagata 551
Query: 405 agaagcgattacgttcggaaacagtattgatttactttaaggatagatacatgggaatcg 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 agaagcgattacgttcggaaacagtattgatttactttaaggatagatacatgggaatcg 491
Query: 465 acttgagtttgattttgggtaagcaggtaactttcccactattttgctacgtttcgtatc 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 acttgagtttgattttgggtaagcaggtaactttcccactattttgctacgtttcgtatc 431
Query: 525 aattgtataaagatctggtttgtggcgatgcgaaacaaattaattccagtgtgaacatta 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 aattgtataaagatctggtttgtggcgatgcgaaacaaattaattccagtgtgaacatta 371
Query: 585 gtgacgatgttttcgctgatgatattgataagaaaagtactgcgctaaaagataacggtg 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 gtgacgatgttttcgctgatgatattgataagaaaagtactgcgctaaaagataacggtg 311
Query: 645 ataagcaagaagagagatgggaacctgtgagtttcatgaaagacattcagccatctacag 704
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 310 ataagcaagaagagagatgggaacctgtgagtttcatgaaagacatccagccatctacag 251
Query: 705 cagaaagggattacaaatttatgtttcgatacaccacctttcccttaccaacctttcaag 764
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 250 cagaaagggattacaaa-ttatggttcgatacaccacctttcccttaccaacctttcaag 192
Query: 765 ncctggtgaatacagattaacaatggggtgttaggcccgatgccaaatgaatattgccta 824
||||||||||||||||||||||| |||||| ||| |||||||||||||||||||| |||
Sbjct: 191 -cctggtgaatacagattaacaat-gggtgtaagg-ccgatgccaaatgaatattggcta 135
Query: 825 gtgtttgaaagcactctttaagattgtatagaaaagaagggggatgtgattcaaaat-at 883
|||||||||||||||||| ||||| | |||||||||||| |||||||||| ||||| ||
Sbjct: 134 gtgtttgaaagcactcttaaagatagaatagaaaagaagtgggatgtgatcaaaaataat 75
Query: 884 tctcatgatgtgat-tatcatttggatcccgcttttattaatt 925
| | |||||||| || ||||||||||||||| | |||||||
Sbjct: 74 tacaaggatgtgatataccatttggatcccgctatgattaatt 32
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,591
Number of Sequences: 1807
Number of extensions: 13591
Number of successful extensions: 106
Number of sequences better than 1.0e-20: 1
length of query: 937
length of database: 10,358,551
effective HSP length: 16
effective length of query: 921
effective length of database: 10,329,639
effective search space: 9513597519
effective search space used: 9513597519
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)