BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZH06FM1.SCF screened BAC_end
(973 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1765 1497 0.0
>3x_Contig1765
Length = 24733
Score = 1497 bits (755), Expect = 0.0
Identities = 853/883 (96%), Gaps = 3/883 (0%)
Strand = Plus / Plus
Query: 88 cggttaacggtgaaatctaaggggcgcaacttttgagataaaagaagttatttaatgctc 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17602 cggttaacggtgaaatctaaggggcgcaacttttgagataaaagaagttatttaatgctc 17661
Query: 148 tgattcattacaagctacatgtatatatatttgtataatgttatattcgcgtcttacgta 207
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 17662 tgattcattacaagctacatgtatatagatttgtataatgttatattcgcgtcttacgta 17721
Query: 208 taatcatacattatttttgctatttcatacccgtcgaataaattcaggtatatatatata 267
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17722 taatcatacattatgaatgctatttcatacccgtcgaataaattcaggtatatatatata 17781
Query: 268 aacaaaagtacggtattggtacacaaataatgggtaattcttttttattatcgtatagac 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17782 aacaaaagtacggtattggtacacaaataatgggtaattcttttttattatcgtatagac 17841
Query: 328 atgattaatacacagaaacagcacaaacaatacattgtatttaaatacaattgagccgca 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17842 atgattaatacacagaaacagcacaaacaatacattgtatttaaatacaattgagccgca 17901
Query: 388 tatgtgattgattgatgagatttcaaataagtgagttgaaaataaataggagtagaggga 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17902 tatgtgattgattgatgagatttcaaataagtgagttgaaaataaataggagtagaggga 17961
Query: 448 aaaacagctaacaacaaataagatgaacatcaatgcgcagatattcacgctttatggtca 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17962 aaaacagctaacaacaaataagatgaacatcaatgcgcagatattcacgctttatggtca 18021
Query: 508 tatatgttttaccctttttatctcttgaatcgagtgagattccgatagcgaaaaggatga 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18022 tatatgttttaccctttttatctcttgaatcgagtgagattccgatagcgaaaaggatga 18081
Query: 568 atgttatgaaaatctgagaacatcattccaaagttgatgtcctaggcctggtagacgtat 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18082 atgttatgaaaatctgagaacatcattccaaagttgatgtcctaggcctggtagacgtat 18141
Query: 628 ggagtgccggatagataaatgtttcccgacagtagcgtatccacatttttaaaatatgtt 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18142 ggagtgccggatagataaatgtttcccgacagtagcgtatccacatttttaaaatatgtt 18201
Query: 688 ttgaagtgacggtatattctaagaagtaaaataattgaacaaaagcatcaatgaaaagac 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18202 ttgaagtgacggtatattctaagaagtaaaataattgaacaaaagcatcaatgaaaagac 18261
Query: 748 atttaaaagtataatgatgagaaatgatataatttcaaatgtcanaagaaacttattcat 807
| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 18262 acttaaaagtataatgatgagaaatgatataa-ttcaaatgtcaaaagaaacttattcat 18320
Query: 808 cgngcttcttcatcttctttaccaccgtncattataccacccttgatanctttccataac 867
|| ||||||||||||||| |||||||| ||| ||||||||||||||| |||||||||||
Sbjct: 18321 cgt-cttcttcatcttcttcaccaccgttcatgataccacccttgatatctttccataac 18379
Query: 868 ttaccttttttgtggttttcctaccaagaagccacaccattttcgaatgccgctttggta 927
|||||||| ||||||||||| |||||||| | ||||||| | ||||| || || |||| |
Sbjct: 18380 ttacctttgttgtggttttcgtaccaagaggtcacaccagtatcgaaggcagc-ttggaa 18438
Query: 928 aaataatgcttagccgaacaccgtaccaacgaaaacagagttt 970
|| || || || ||||||| |||||||||||||||||||||
Sbjct: 18439 aacgaaggcagaggcgaacacggtaccaacgaaaacagagttt 18481
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,956
Number of Sequences: 1807
Number of extensions: 10956
Number of successful extensions: 104
Number of sequences better than 1.0e-20: 1
length of query: 973
length of database: 10,358,551
effective HSP length: 16
effective length of query: 957
effective length of database: 10,329,639
effective search space: 9885464523
effective search space used: 9885464523
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)