BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZH06RM1.SCF screened BAC_end
(947 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1068 1475 0.0
>3x_Contig1068
Length = 5568
Score = 1475 bits (744), Expect = 0.0
Identities = 820/836 (98%), Gaps = 7/836 (0%)
Strand = Plus / Minus
Query: 43 ctttggttctcgtatgatgaatatg-agatagtatacccttaacacatgttttgaaccat 101
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 5035 ctttggttctcgtatgatgaatatgtagatagtatacccttaacacatgttttgaaccat 4976
Query: 102 caagaaagattgagaccaggaagtggcagctcctctattaggggtgcaagtccaataaag 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4975 caagaaagattgagaccaggaagtggcagctcctctattaggggtgcaagtccaataaag 4916
Query: 162 aacaatttattcgatcaaaaatttgttgatacagaagcttcagttcgtgatacacataaa 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4915 aacaatttattcgatcaaaaatttgttgatacagaagcttcagttcgtgatacacataaa 4856
Query: 222 attctcatgatgaaactggtaacgaacaaaactgtattgttttgtacatctaagggtgaa 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4855 attctcatgatgaaactggtaacgaacaaaactgtattgttttgtacatctaagggtgaa 4796
Query: 282 atatcaatcataaatgagacaattaagcctatttcaaatccatctctaaacgatataaaa 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4795 atatcaatcataaatgagacaattaagcctatttcaaatccatctctaaacgatataaaa 4736
Query: 342 gtgttcaaaaaaattaacaatgatttggctgttctttgtagcaagaaaggagacatcaag 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4735 gtgttcaaaaaaattaacaatgatttggctgttctttgtagcaagaaaggagacatcaag 4676
Query: 402 ctatttgatggcaccaaactttccaagtacgaacttgatatatcagacctttcttctgac 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4675 ctatttgatggcaccaaactttccaagtacgaacttgatatatcagacctttcttctgac 4616
Query: 462 gaggaaataacttctctggatttcagtgtgaatgaaaactattttgttgttggtgattcc 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4615 gaggaaataacttctctggatttcagtgtgaatgaaaactattttgttgttggtgattcc 4556
Query: 522 acagggaagttatctgtatacaaagataacgtatgcgaatatcagagcaaagttcacagc 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4555 acagggaagttatctgtatacaaagataacgtatgcgaatatcagagcaaagttcacagc 4496
Query: 582 gctgccattaacggtatccaaatatatgagaaagatgctttcaaaattgtaatcactatc 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4495 gctgccattaacggtatccaaatatatgagaaagatgctttcaaaattgtaatcactatc 4436
Query: 642 agca-gagacagaacaatgaacttcatagaactacgagctggggaatggaatattttgcg 700
|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 4435 agcacgagacagaacaatgaacttcatagaactacgagctggggaatggaata-tttgcg 4377
Query: 701 -aacagttaaagacaat-atgggaatattatacagcttgagatgtgcgacaattagttat 758
|||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||
Sbjct: 4376 aaacagttaaagacaataaggggaatattatacagcttgagatgtgcgacaataagttat 4317
Query: 759 -tacaatttctagtgataggactgtatcttgctatcggatagatattgtcgacaatacct 817
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4316 atacaatttcgagtgataggactgtatcttgctatcggatagatattgtcgacaatacct 4257
Query: 818 taaacgttttaaaagtaaacattcctttccgtaaagaatttttcattgatattaca 873
||||||||| ||||| |||| |||||||||||||||||| | |||||| ||||||
Sbjct: 4256 taaacgtttcaaaag-aaaccatcctttccgtaaagaattctccattgagattaca 4202
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8753
Number of Sequences: 1807
Number of extensions: 8753
Number of successful extensions: 62
Number of sequences better than 1.0e-20: 1
length of query: 947
length of database: 10,358,551
effective HSP length: 16
effective length of query: 931
effective length of database: 10,329,639
effective search space: 9616893909
effective search space used: 9616893909
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)