BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZH07FM1.SCF screened BAC_end
(948 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig370 821 0.0
3x_Contig1610 428 e-120
>3x_Contig370
Length = 983
Score = 821 bits (414), Expect = 0.0
Identities = 436/442 (98%), Gaps = 1/442 (0%)
Strand = Plus / Plus
Query: 83 ttcattgaaatgatttcgattttaacattaagatttgtatgaagatgaggcttctaagag 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 ttcattgaaatgatttcgattttaacattaagatttgtatgaagatgaggcttctaagag 601
Query: 143 acgcatacaagaacaggattatttgggacttttcagttgcgagtgcagagcgaagtgaag 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 acgcatacaagaacaggattatttgggacttttcagttgcgagtgcagagcgaagtgaag 661
Query: 203 tagtaatctttgctcttgtgtttctgttcaatatctataacaaatgcctcgttttttccc 262
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 tagtaatctttgcgccagtgtttctgttcaatatctataacaaatgcctcgttttttccc 721
Query: 263 atctctcaaacagggtttgagaaaccttgctactgcggtagagacggaatctacagtagc 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 atctctcaaacagggtttgagaaaccttgctactgcggtagagacggaatctacagtagc 781
Query: 323 agtcaaagccagtcagttcaagagacctcgtcaatccgtacaaagcagaatcttggagta 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 agtcaaagccagtcagttcaagagacctcgtcaatccgtacaaagcagaatcttggagta 841
Query: 383 cactcgtgaagcgatt-aaaactgagaaaccacattttaaagttggtggtgcagagctct 441
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 842 cactcgtgaagcgattaaaaactgagaaaccacattttaaagtgggtggtgcagagctct 901
Query: 442 attttcctaaagcgagagttattctactaagaccaaatgctaaacacactccatatcaag 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 902 attttcctaaagcgagagttattctactaagaccaaatgctaaacacactccatatcaag 961
Query: 502 cgaaattcatcgttcctaaatc 523
|| |||||||||||||||||||
Sbjct: 962 cggaattcatcgttcctaaatc 983
>3x_Contig1610
Length = 13981
Score = 428 bits (216), Expect = e-120
Identities = 295/314 (93%), Gaps = 7/314 (2%)
Strand = Plus / Plus
Query: 594 cagttattgcatgccagatacactcgtgctacgccggtgtcgcccaggtaccgtggtcct 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cagttattgcatgccagatacactcgtgctacgccggtgtcgcccaggtaccgtggtcct 60
Query: 654 caaatcaagaagatgactatcgatatggcagaaccatttatctggcctgcagaacctgag 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 caaatcaagaagatgactatcgatatggcagaaccatttatctggcctgcagaacctgag 120
Query: 714 gacaagagtgcatggaatactgagttccanaaggaattggaaaaa-tcagaaacgattgg 772
||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||
Sbjct: 121 gacaagagtgcatggaatactgagttccaaaaggaattggaaaaagacagaaacgatagg 180
Query: 773 atgagactaggatccgacgcttacaaaccttc-aaggcattcgatggtgtattgggacca 831
||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct: 181 atgagactaggatccgacgctaacaaaccttcaaaggcattcgatggtgtattgggacca 240
Query: 832 tatccagg-aactgcaaaccttttatttcttagattcttt--aaagaagactagtg-att 887
|| ||||| ||||||||| | ||| ||| ||||||| || |||||||||||||| ||
Sbjct: 241 ta-ccaggaaactgcaaaacctttcattcctagattccttcaaaagaagactagtgaata 299
Query: 888 agaaagctagagag 901
|||| |||||||||
Sbjct: 300 agaaggctagagag 313
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6059
Number of Sequences: 1807
Number of extensions: 6059
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 2
length of query: 948
length of database: 10,358,551
effective HSP length: 16
effective length of query: 932
effective length of database: 10,329,639
effective search space: 9627223548
effective search space used: 9627223548
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)