BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZH07RM1.SCF screened BAC_end
(922 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1384 1552 0.0
>3x_Contig1384
Length = 9372
Score = 1552 bits (783), Expect = 0.0
Identities = 859/881 (97%), Gaps = 3/881 (0%)
Strand = Plus / Minus
Query: 44 gcttgaatggttccagttgaaagttggttcgatattcatttaaatgaagcgtaaataccg 103
||||||||||||||||||||| | | |||||||||||||||| ||||||||||||||||
Sbjct: 8037 gcttgaatggttccagttgaatggttgttcgatattcatttagttgaagcgtaaataccg 7978
Query: 104 tcgccttgcgctcatggttccttaaattccgatttaaatagcttcacaacacaagctgcg 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7977 tcgccttgcgctcatggttccttaaattccgatttaaatagcttcacaacacaagctgcg 7918
Query: 164 attaattactttcaattagactacaaaatatgaaaagaatgctagtatgttcgattacat 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7917 attaattactttcaattagactacaaaatatgaaaagaatgctagtatgttcgattacat 7858
Query: 224 gattgttagttcctgaagatgcatagatgatacgtgtctgtttgtgttggtattaaatca 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7857 gattgttagttcctgaagatgcatagatgatacgtgtctgtttgtgttggtattaaatca 7798
Query: 284 tcatgacaagaactagcaccaaaatctgaaaattctataataaagtggtttagatgcaag 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7797 tcatgacaagaactagcaccaaaatctgaaaattctataataaagtggtttagatgcaag 7738
Query: 344 tttgactctttgaatttctaattcatgtttcattatttcaacatcactatgtgacaatcc 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7737 tttgactctttgaatttctaattcatgtttcattatttcaacatcactatgtgacaatcc 7678
Query: 404 tgtatcgaggtcgataccagagagtgggataacaaatgatttccaattccctgtatagga 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7677 tgtatcgaggtcgataccagagagtgggataacaaatgatttccaattccctgtatagga 7618
Query: 464 cttgtgaccaatgtaaacggcgatcattatggggattgatagacaatatttgaagaaagc 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7617 cttgtgaccaatgtaaacggcgatcattatggggattgatagacaatatttgaagaaagc 7558
Query: 524 ttctgcactgggtgattcgccgagagggaaaagtgagacgtaaatttcacctacgatcaa 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7557 ttctgcactgggtgattcgccgagagggaaaagtgagacgtaaatttcacctacgatcaa 7498
Query: 584 cagggcactcaaaagtaagcccaaataagccccccaaattccaagcatcgatttgtacgc 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7497 cagggcactcaaaagtaagcccaaataagccccccaaattccaagcatcgatttgtacgc 7438
Query: 644 aatttcgtcggcacttctgntctgtttctttaatgcccatctataacgcanataagaata 703
||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct: 7437 aatttcgtcggcacttctgttctgtttctttaatgcccatctataacgcaaataagaata 7378
Query: 704 gcaaatggagaaccaaatgaacttcgaagaaatagaacataaggcaaacaaccaatcaaa 763
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 7377 gcaaatggagaaccaaatgaacatcgaagaaatagaacataaggcaaacaaccaatcaaa 7318
Query: 764 tacctcgctaactttgttctaagccacaatgaagggtcaaaaccctaaaagacccacgac 823
||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||
Sbjct: 7317 tacctcgctaactttgttcgaagccacaatgaagggcaaaaacccgaaaagacccacgac 7258
Query: 824 aagaataccaaacaaaggtctacccttacgattcga-atatccacaaattgatggtaatt 882
||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||
Sbjct: 7257 aagaataccaaacaaaggtctacccttacga-tcgacatatccacaaatcgatggtaatt 7199
Query: 883 gccca-aaactttcaaaaattgttttacacgtgatgcagca 922
||||| || || |||| ||||| | |||||||||||||||
Sbjct: 7198 gcccagaagctcccaaagattgtatcacacgtgatgcagca 7158
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6925
Number of Sequences: 1807
Number of extensions: 6925
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 922
length of database: 10,358,551
effective HSP length: 16
effective length of query: 906
effective length of database: 10,329,639
effective search space: 9358652934
effective search space used: 9358652934
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)