BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZH08RM1.SCF screened BAC_end
(940 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1789 1554 0.0
>3x_Contig1789
Length = 30977
Score = 1554 bits (784), Expect = 0.0
Identities = 878/898 (97%), Gaps = 9/898 (1%)
Strand = Plus / Plus
Query: 49 cttgtataaggagccaatctaagttc-gaggtggtttacgatatgttgaatgctgccaga 107
||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 28695 cttgtataaggagccaatctaaggacagaggtggtttacgatatgttgaatgctgccaga 28754
Query: 108 atgaactcatctcttttatttaaagctcatctccataatgtaacaacaagagccacaaga 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28755 atgaactcatctcttttatttaaagctcatctccataatgtaacaacaagagccacaaga 28814
Query: 168 agactactttcacagagctgtaaactggggcagaagcatgtcagcagcaccgcagatgct 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28815 agactactttcacagagctgtaaactggggcagaagcatgtcagcagcaccgcagatgct 28874
Query: 228 attgaagaacataataccatttctgaggtgatagaagagatcaaacagaaaaagaacccg 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28875 attgaagaacataataccatttctgaggtgatagaagagatcaaacagaaaaagaacccg 28934
Query: 288 gataaagaggcgatgaacaggttattgaatccagtgtttttcaataaacagatcgtcttc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28935 gataaagaggcgatgaacaggttattgaatccagtgtttttcaataaacagatcgtcttc 28994
Query: 348 tctgataaatcaccatcatggacagggataatggagacggataaagattctgatagccag 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28995 tctgataaatcaccatcatggacagggataatggagacggataaagattctgatagccag 29054
Query: 408 acaccgctaccccattccagtttcaggcttagtgatcatgatataagagatttaccaata 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29055 acaccgctaccccattccagtttcaggcttagtgatcatgatataagagatttaccaata 29114
Query: 468 tcggcgaccagttatcaaaatgtgcgattatccggcatagagaaagccattcaactagtg 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29115 tcggcgaccagttatcaaaatgtgcgattatccggcatagagaaagccattcaactagtg 29174
Query: 528 gcagaaaaagagaagttgagagtagcattggaacacgcactagccccacatttgaatcat 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29175 gcagaaaaagagaagttgagagtagcattggaacacgcactagccccacatttgaatcat 29234
Query: 588 ttaaagaagactgtgaccacagataaagagttgttggacacttgcatgcattacttggac 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29235 ttaaagaagactgtgaccacagataaagagttgttggacacttgcatgcattacttggac 29294
Query: 648 caatacttgcaaagggatcccaagatggaggttcaaacgaaaaggttcatcgaagtgatc 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29295 caatacttgcaaagggatcccaagatggaggttcaaacgaaaaggttcatcgaagtgatc 29354
Query: 708 cacaagagatcttgcgaggaaccattcaatttaccacaaccttattcaataacgttacct 767
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 29355 cacaagagatcttgcgaggaaccatccaatttaccacaaccttattcaataacgttacct 29414
Query: 768 gccatcatacggtacatatttgatagtggagagttcaaactacctgnagatag-aactat 826
|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct: 29415 gccatcatacggtacatatttgatagtggagagttcaaactacctggagatagaaactat 29474
Query: 827 attatattaaaagac-atttac-ataaatgcaaaa-ttgtaaagatcttngccttta-ct 882
|||||||| |||||| |||||| |||||||||||| |||||||||||| ||||||| ||
Sbjct: 29475 attatatt-aaagacaatttacaataaatgcaaaagttgtaaagatctcggcctttacct 29533
Query: 883 tgacgtatgc-acatcgatttttacaac-tgcttattaaatttatgttgggagaatat 938
|||||||||| |||||||||| |||||| |||| ||||| ||||||| || |||||||
Sbjct: 29534 tgacgtatgcaacatcgatttctacaacttgctaattaagtttatgtgggaagaatat 29591
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7012
Number of Sequences: 1807
Number of extensions: 7012
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 940
length of database: 10,358,551
effective HSP length: 16
effective length of query: 924
effective length of database: 10,329,639
effective search space: 9544586436
effective search space used: 9544586436
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)