BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZH10FM1.SCF screened BAC_end
(962 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1186 1522 0.0
>3x_Contig1186
Length = 4633
Score = 1522 bits (768), Expect = 0.0
Identities = 849/868 (97%), Gaps = 6/868 (0%)
Strand = Plus / Plus
Query: 88 attaactaaatacatttctccagaagaaaagaatactctaaagacacaactaattactga 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 900 attaactaaatacatttctccagaagaaaagaatactctaaagacacaactaattactga 959
Query: 148 tttgaaggcaattgatattaaggacaagaacagtaagaagcaagtactagccaagtttac 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 960 tttgaaggcaattgatattaaggacaagaacagtaagaagcaagtactagccaagtttac 1019
Query: 208 tgatgcaaagaactttttgacgttatctgaagaggtgagactacgcagaaaattcttgaa 267
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1020 tgatgcaaagaacttcttgacgttatctgaagaggtgagactacgcagaaaattcttgaa 1079
Query: 268 gccagtgaaaccagaaacagaattgaagaaattggaagaaccactcaaaccttccaagaa 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1080 gccagtgaaaccagaaacagaattgaagaaattggaagaaccactcaaaccttccaagaa 1139
Query: 328 aaatctaaccaccagacgttacaactacgaacaaaacacgatagatgtcattacaagacc 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1140 aaatctaaccaccagacgttacaactacgaacaaaacacgatagatgtcattacaagacc 1199
Query: 388 aaagaccgatttcttgagcaaattgtaaatcttccccaagtcgttacgtaacaaaccatt 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1200 aaagaccgatttcttgagcaaattgtaaatcttccccaagtcgttacgtaacaaaccatt 1259
Query: 448 tagagccttgtacatattaacaaaagaaccacaacaatcatcatagtttaaactgaaaaa 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1260 tagagccttgtacatattaacaaaagaaccacaacaatcatcatagtttaaactgaaaaa 1319
Query: 508 aacgaaagttttttagagactatatatcatttggaaaggttaattccatattatatcgtt 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1320 aacgaaagttttttagagactatatatcatttggaaaggttaattccatattatatcgtt 1379
Query: 568 aacgtatttaatttgtctatatgtgtgagacaaaatccaaaacatactcttacattacta 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1380 aacgtatttaatttgtctatatgtgtgagacaaaatccaaaacatactcttacattacta 1439
Query: 628 tttttttgatattggattgttttgaggtacaaaactatggcaggtgagccct-ttggatc 686
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1440 tttttttgatattggattgttttgaggtacaaaactatggcaggtgagccctattggatc 1499
Query: 687 aaccaggaggcaattgagagatatcaacgatgtcattcatcttgctttgagcatcatctt 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1500 aaccaggaggcaattgagagatatcaacgatgtcattcatcttgctttgagcatcatctt 1559
Query: 747 catcaccgacagataaatgggtttcttggtagagccatcatacctgatcttgccactttc 806
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct: 1560 catcaccgacagataaatggg-ttcttggtagagccatcatacctgatcttgccacttcc 1618
Query: 807 aagataccgaagggtt-cacaagtttcaaaaatgcagagatacgggatgggttaacacat 865
||||||||||| |||| |||||||||||| |||||||||||||||||||| ||| |||||
Sbjct: 1619 aagataccgaaaggttccacaagtttcaagaatgcagagatacgggatggtttagcacat 1678
Query: 866 aatttcacattacaactttgtttcagcgatatcaacattcttaccaccaaagttatccat 925
|||| |||| |||||||||| |||||||||||||||| ||||||||||||||||| |||
Sbjct: 1679 aattccacaatacaactttg-ttcagcgatatcaacaatcttaccaccaaagtta-ccag 1736
Query: 926 tcagtttagaaatgtccgtttaaatgtt 953
||| ||||| |||| ||||||||||||
Sbjct: 1737 tcaagttagagatgt-cgtttaaatgtt 1763
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8921
Number of Sequences: 1807
Number of extensions: 8921
Number of successful extensions: 80
Number of sequences better than 1.0e-20: 1
length of query: 962
length of database: 10,358,551
effective HSP length: 16
effective length of query: 946
effective length of database: 10,329,639
effective search space: 9771838494
effective search space used: 9771838494
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)