BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZH10RM1.SCF screened BAC_end
(921 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig445 741 0.0
3x_Contig641 230 4e-60
3x_Contig1588 127 4e-29
>3x_Contig445
Length = 1719
Score = 741 bits (374), Expect = 0.0
Identities = 416/425 (97%), Gaps = 4/425 (0%)
Strand = Plus / Minus
Query: 442 ataaactattttcatctctttcttacttctatacaatgtttatgattgacaaaatcagca 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1708 ataaactattttcatctctttcttacttctatacaatgtttatgattgacaaaatcagca 1649
Query: 502 tctgaacctttaaattttgatctcaaaactggtttgaaataagtacacagatttccatat 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1648 tctgaacctttaaattttgatctcaaaactggtttgaaataagtacacagatttccatat 1589
Query: 562 taaaggcaaaagataaatgaaatagataaagaccaaaaaagtatattactttacctcttg 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1588 taaaggcaaaagataaatgaaatagataaagaccaaaaaagtatattactttacctcttg 1529
Query: 622 agatgggtgttttttgttcccaccctgaaacccttctt-agtaacagccgattgtagaag 680
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1528 agatgggtgttttttgttcccaccctgaaacccttcttaagtaacagccgattgtagaag 1469
Query: 681 gaacaaaatgtagttagtacagcgggttcctagaaatagaaaggtctaatctgngaaaaa 740
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1468 gaacaaaatgtagttagtacagcgggttcctagaaatagaaaggtctaatctggaaaaaa 1409
Query: 741 gtaaaaaaataatgatacgaaatcttccccgccaggactcgaacctggaatcttttgttt 800
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 1408 gtaaaaaaataatgatacgaaatcttccccgccaggactcgaacctggaatcttctggtt 1349
Query: 801 tcagaa-tagctaacatcgtagccagacgcccgtgaccattgtgccacgaggaaataaga 859
|||||| |||||||||||||||||||||| |||||||||||| ||||||||| |||||||
Sbjct: 1348 tcagaagtagctaacatcgtagccagacg-ccgtgaccattgggccacgagg-aataaga 1291
Query: 860 aaacg 864
|||||
Sbjct: 1290 aaacg 1286
>3x_Contig641
Length = 2317
Score = 230 bits (116), Expect = 4e-60
Identities = 116/116 (100%)
Strand = Plus / Minus
Query: 42 atctttatacttgtcttcttgctggaaagtattccataaagtcctcattaaccatggctt 101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116 atctttatacttgtcttcttgctggaaagtattccataaagtcctcattaaccatggctt 57
Query: 102 ggactcgtcattattcagattggccaaaaacttatcccttttttcctcaaacacga 157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56 ggactcgtcattattcagattggccaaaaacttatcccttttttcctcaaacacga 1
>3x_Contig1588
Length = 14692
Score = 127 bits (64), Expect = 4e-29
Identities = 87/92 (94%), Gaps = 2/92 (2%)
Strand = Plus / Plus
Query: 763 tcttccccgccaggactcgaacctggaatcttttgttttcagaa-tagctaacatcgtag 821
|||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||
Sbjct: 7250 tcttccccgccaggactcgaacctggaatcttctggtttcagaagtagctaacatcgtag 7309
Query: 822 ccagacgcccgtgaccattgtgccacgaggaa 853
||||||| |||||||||||| |||||||||||
Sbjct: 7310 ccagacg-ccgtgaccattgggccacgaggaa 7340
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8280
Number of Sequences: 1807
Number of extensions: 8280
Number of successful extensions: 70
Number of sequences better than 1.0e-20: 3
length of query: 921
length of database: 10,358,551
effective HSP length: 16
effective length of query: 905
effective length of database: 10,329,639
effective search space: 9348323295
effective search space used: 9348323295
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)