BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZA01RM1.SCF screened BAC_end
(905 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1485 1663 0.0
>3x_Contig1485
Length = 9830
Score = 1663 bits (839), Expect = 0.0
Identities = 854/858 (99%), Gaps = 1/858 (0%)
Strand = Plus / Minus
Query: 48 tcttcttctcctgttgctttttctcctttcttaatcgtaccattgtttcgaacggatcct 107
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 7623 tcttcttctcctgttgctccttctcctttcttaatcgtaccattgtttcgaacggatcct 7564
Query: 108 catcaaataaccgagcacattttcccgggttttctttcaataacgcctttctgaaatctt 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7563 catcaaataaccgagcacattttcccgggttttctttcaataacgcctttctgaaatctt 7504
Query: 168 caaggtcataccatagattcttatggtttggtggaagcattagatatagcttgctgttga 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7503 caaggtcataccatagattcttatggtttggtggaagcattagatatagcttgctgttga 7444
Query: 228 atgcaattctatgcaaggccactgtagccgcataatgacgggcctcagcgggtgtgcttt 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7443 atgcaattctatgcaaggccactgtagccgcataatgacgggcctcagcgggtgtgcttt 7384
Query: 288 gtggaggaacaatttcctttttttccaaactcatccgcaaaaccaaagtttctttagtct 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7383 gtggaggaacaatttcctttttttccaaactcatccgcaaaaccaaagtttctttagtct 7324
Query: 348 tgggatcagtacaagatatcaacgctgtagacaccagccctttatccccaatcttcttca 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7323 tgggatcagtacaagatatcaacgctgtagacaccagccctttatccccaatcttcttca 7264
Query: 408 tatcatactcaactttattccatttctgtttctgacaatattcatgtaacacactgtgag 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7263 tatcatactcaactttattccatttctgtttctgacaatattcatgtaacacactgtgag 7204
Query: 468 gcagtttccctgtccaactaaccgagctagtcacattagcacgtgactgtaatcgctttg 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7203 gcagtttccctgtccaactaaccgagctagtcacattagcacgtgactgtaatcgctttg 7144
Query: 528 ccttctcctcctcgcttaatggttcacgcttattcttcccgccactacctttctttcctt 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7143 ccttctcctcctcgcttaatggttcacgcttattcttcccgccactacctttctttcctt 7084
Query: 588 tattattatcattggtcggtagttcttgaactggaacattcttcttcttcttagccatga 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7083 tattattatcattggtcggtagttcttgaactggaacattcttcttcttcttagccatga 7024
Query: 648 tttggaattccgaaggaaaatacgttcgcagtaaaatagcttccttaaaacaaatatccg 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7023 tttggaattccgaaggaaaatacgttcgcagtaaaatagcttccttaaaacaaatatccg 6964
Query: 708 atggatactgtcacacaattaacggaagcgttagttgtcctctgtattcaaacacgccct 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6963 atggatactgtcacacaattaacggaagcgttagttgtcctctgtattcaaacacgccct 6904
Query: 768 ctgatctatttggacttggatcctaccagttaacaatgatataataatgaatggttcaga 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6903 ctgatctatttggacttggatcctaccagttaacaatgatataataatgaatggttcaga 6844
Query: 828 tgttgntctatttcttgtatccgggtaacataattaaaattttgaaatttc-acgaagca 886
||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 6843 tgttgttctatttcttgtatccgggtaacataattaaaattttgaaatttcaacgaagca 6784
Query: 887 gcgagaacaggcatttta 904
||||||||||||||||||
Sbjct: 6783 gcgagaacaggcatttta 6766
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8370
Number of Sequences: 1807
Number of extensions: 8370
Number of successful extensions: 72
Number of sequences better than 1.0e-20: 1
length of query: 905
length of database: 10,358,551
effective HSP length: 16
effective length of query: 889
effective length of database: 10,329,639
effective search space: 9183049071
effective search space used: 9183049071
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)