BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC17ZA04FM1.SCF screened BAC_end
         (967 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1585                                                        1550   0.0  

>3x_Contig1585 
          Length = 11490

 Score = 1550 bits (782), Expect = 0.0
 Identities = 861/881 (97%), Gaps = 6/881 (0%)
 Strand = Plus / Plus

                                                                        
Query: 86   actacgactcataatagtaaagcatgcgagtattcattcgagtaaccaaggtccgtcata 145
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2194 actacgactcataatagtaaagcatgcgagtattcattcgagtaaccaaggtccgtcata 2253

                                                                        
Query: 146  tttacatttcctctcacagacacacgtcgtggtggttaaacgacttatgttggtaaaact 205
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2254 tttacatttcctctcacagacacacgtcgtggtggttaaacgacttatgttggtaaaact 2313

                                                                        
Query: 206  aaggctgtgaacgctcttcgtgattgctacactgtcgcctttaactgtgtcgtatgttat 265
            |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2314 aaggctgtgaacgc-catcgtgattgctacactgtcgcctttaactgtgtcgtatgttat 2372

                                                                        
Query: 266  ttccagtttaattttactgatgagaggttcaaaaatttcatcaatgtgtaaagataagct 325
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2373 ttccagtttaattttactgatgagaggttcaaaaatttcatcaatgtgtaaagataagct 2432

                                                                        
Query: 326  ggaaacgagtggatattgtaccaaatatatatatacactgtggtttaaacgatgagattt 385
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2433 ggaaacgagtggatattgtaccaaatatatatatacactgtggtttaaacgatgagattt 2492

                                                                        
Query: 386  gatcgcctatatactcacagtagtatatgtaatgtttcttctagtaaacatggctcatat 445
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2493 gatcgcctatatactcacagtagtatatgtaatgtttcttctagtaaacatggctcatat 2552

                                                                        
Query: 446  tttccgtatgtgaaaccagtcacaccttacaatatgaaccatgtttcggtcttgaagggt 505
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2553 tttccgtatgtgaaaccagtcacaccttacaatatgaaccatgtttcggtcttgaagggt 2612

                                                                        
Query: 506  tctaccgtcctcataattcagtcgtttatattcctctttttttacagcatccggtaaaca 565
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2613 tctaccgtcctcataattcagtcgtttatattcctctttttttacagcatccggtaaaca 2672

                                                                        
Query: 566  agttaaagtaaataaacctctataacagcagaactggatatcgtttggaattggtggtag 625
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2673 agttaaagtaaataaacctctataacagcagaactggatatcgtttggaattggtggtag 2732

                                                                        
Query: 626  actttgacgtaggtgttattagaggccacatcaattgttgccatagtgagttgatcattt 685
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2733 actttgacgtaggtgttattagaggccacatcaattgttgccatagtgagttgatcattt 2792

                                                                        
Query: 686  aagaatcaactattcaggatatgacttcagtttagcttcctcttttcgttttcttcatga 745
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2793 aagaatcaactattcaggatatgacttcagtttagcttcctcttttcgttttcttcatga 2852

                                                                        
Query: 746  attttttctttaagtgcgtgccggccgtataatgctgataatgaacaggatgttgcanan 805
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | 
Sbjct: 2853 attttttctttaagtgcgtgccggccgtataatgctgataatgaacaggatgttgcaaaa 2912

                                                                        
Query: 806  acaggatttgcatctnctatatgaatttcgcagaatgccattttatatttttcctgncat 865
            ||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||  ||
Sbjct: 2913 acaggatttgcatctcctatatgaatttcgcagaatgccatttaata-ttttcctgcaat 2971

                                                                        
Query: 866  tcaataatagccccaacaggggttcttcacgtttgttctcacttcgcatgcgttggaaat 925
             ||||||||| |||||||  |||||| |||||||||||||||| |||||||| |||||||
Sbjct: 2972 ccaataatag-cccaaca-aggttctccacgtttgttctcactccgcatgcg-tggaaat 3028

                                                     
Query: 926  tcaaaagggattttcattccattggcctggttcacgnatga 966
            ||||||||||||||||| | ||| |||||||||||| ||||
Sbjct: 3029 tcaaaagggattttcatacaatt-gcctggttcacgaatga 3068


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8620
Number of Sequences: 1807
Number of extensions: 8620
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 967
length of database: 10,358,551
effective HSP length: 16
effective length of query: 951
effective length of database: 10,329,639
effective search space: 9823486689
effective search space used: 9823486689
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)