BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZA06RM1.SCF screened BAC_end
(948 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1724 1600 0.0
>3x_Contig1724
Length = 20938
Score = 1600 bits (807), Expect = 0.0
Identities = 890/910 (97%), Gaps = 7/910 (0%)
Strand = Plus / Minus
Query: 42 gcttatctgtttgccctcttcactttgacatatccaggtccaggacaccggacacaagag 101
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 10767 gcttatctgtttgccctcttcactgagacatatccaggtccaggacaccggacacaagag 10708
Query: 102 acaagagacaagagacaagagaaactaagggagggggaagaaaaacggtattattttacc 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10707 acaagagacaagagacaagagaaactaagggagggggaagaaaaacggtattattttacc 10648
Query: 162 ccgcatctatttctcttgaagcactctttaaatgctcgtgataattaatcactttgtaac 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10647 ccgcatctatttctcttgaagcactctttaaatgctcgtgataattaatcactttgtaac 10588
Query: 222 attatgtattctctcttcctaaagtattttcaattacttacccttaatttttgagaggcc 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10587 attatgtattctctcttcctaaagtattttcaattacttacccttaatttttgagaggcc 10528
Query: 282 tctttttcttttcatccgtcagatcaacgatcatagaatcagtttaatcaataaaacttg 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10527 tctttttcttttcatccgtcagatcaacgatcatagaatcagtttaatcaataaaacttg 10468
Query: 342 cgtcaaactactcgtagaagcaaaggattgaatcgtttacagatttccagtccaaccgaa 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10467 cgtcaaactactcgtagaagcaaaggattgaatcgtttacagatttccagtccaaccgaa 10408
Query: 402 ttgtcccaatgtcttagatgagactcaggtgctatgtaatggtgtatgtatgtgtggtta 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10407 ttgtcccaatgtcttagatgagactcaggtgctatgtaatggtgtatgtatgtgtggtta 10348
Query: 462 gcatgaattctaacctccattcttgattgttaattggagtatcactcagccaatcaattt 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10347 gcatgaattctaacctccattcttgattgttaattggagtatcactcagccaatcaattt 10288
Query: 522 tcagaaactgccaaaaccttgaaattttcagcttcaaagaattagatattattataacaa 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10287 tcagaaactgccaaaaccttgaaattttcagcttcaaagaattagatattattataacaa 10228
Query: 582 aagatagagcagcaattacacattcaaacaaaccaatgagaacaaagacagaatcgtgaa 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10227 aagatagagcagcaattacacattcaaacaaaccaatgagaacaaagacagaatcgtgaa 10168
Query: 642 ttgctgtcgattaggagcgtttgaaaaggtacccaattgttgatcgtttaatcggattag 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10167 ttgctgtcgattaggagcgtttgaaaaggtacccaattgttgatcgtttaatcggattag 10108
Query: 702 acatcaattgaagcaaataactggttttgtctctcttagtgagaaaaaagtagcgaaaaa 761
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 10107 acatcaattgaagcaaataactgtttttgtctctcttagtgag-aaaaagtagcgaaaaa 10049
Query: 762 --gaaaaatatgtggaggcgttctatctcga-tttaaggccgtcacc-acaacagtgatt 817
|||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct: 10048 agaaaaaatatgtggaggcgttctatctcgattttaaggccgtcaccaacaacagtgatt 9989
Query: 818 ccatccaatgtgttgagcggatcacaattagaattgtaaccattgtttgattaccatgcc 877
|||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 9988 ccatccaatgtgttgagcggatcacaattagaattgaaaccattgtttgataaccatgct 9929
Query: 878 tgaaccactaaagaggatggatcttaagttactactacacaatttcccactattgggggg 937
|||||||| ||||||||||||| | ||||||||||||||| |||| |||||| |||||
Sbjct: 9928 gaaaccactagagaggatggatctaatgttactactacacaa-ttccaactatt-ggggg 9871
Query: 938 acaacccgac 947
||||||||||
Sbjct: 9870 acaacccgac 9861
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8158
Number of Sequences: 1807
Number of extensions: 8158
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 948
length of database: 10,358,551
effective HSP length: 16
effective length of query: 932
effective length of database: 10,329,639
effective search space: 9627223548
effective search space used: 9627223548
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)