BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZA07FM1.SCF screened BAC_end
(967 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1701 1556 0.0
3x_Contig1805 1352 0.0
>3x_Contig1701
Length = 10926
Score = 1556 bits (785), Expect = 0.0
Identities = 866/886 (97%), Gaps = 6/886 (0%)
Strand = Plus / Minus
Query: 85 aggttaaacgcataagaacctacaatctaatagcattaaacacgtttagatgattcactg 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9071 aggttaaacgcataagaacctacaatctaatagcattaaacacgtttagatgattcactg 9012
Query: 145 attagaatttcggccaagagtacgccattctcgcaaatacccgtgctctctttcctatca 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9011 attagaatttcggccaagagtacgccattctcgcaaatacccgtgctctctttcctatca 8952
Query: 205 ttatcttcggtggtttatagataacttctataatttctgagttggtcattaatgttggta 264
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8951 ttatcttcggtggtaaatagataacttctataatttctgagttggtcattaatgttggta 8892
Query: 265 ctggccttcgctctgtattacttgacatggtattgattttacaatgggagggtcagttat 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8891 ctggccttcgctctgtattacttgacatggtattgattttacaatgggagggtcagttat 8832
Query: 325 ggtttcatgctattattcattcatcactattctcacatttccgcaatactgaaaaggctg 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8831 ggtttcatgctattattcattcatcactattctcacatttccgcaatactgaaaaggctg 8772
Query: 385 caactccatcgttttgtttacttgtttcctgtttaaggaatattttagaaaaacatcatg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8771 caactccatcgttttgtttacttgtttcctgtttaaggaatattttagaaaaacatcatg 8712
Query: 445 aaaaaatgaccaagtatagcagaagttgcacagtgtttattgacatgtgcgatgcc-aac 503
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 8711 aaaaaatgaccaagtatagcagaagttgcacagtgtttattgacatgtgcgatgccaaac 8652
Query: 504 tttgaattgtcgtcggtcggtactccgttttgaaatgctggtatggcttttacgatagaa 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8651 tttgaattgtcgtcggtcggtactccgttttgaaatgctggtatggcttttacgatagaa 8592
Query: 564 tgttttcaacaattattatacaaactaaggctaaaatttatgatgctaattaaatgcaag 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8591 tgttttcaacaattattatacaaactaaggctaaaatttatgatgctaattaaatgcaag 8532
Query: 624 aacttaaatgtggagggtttccatgagcacgtcaattgagagcagaaaaactgttaagaa 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8531 aacttaaatgtggagggtttccatgagcacgtcaattgagagcagaaaaactgttaagaa 8472
Query: 684 gttgacgattcggtagtgaaatcaaatggaaaaaaagagaatgccatgatactttttttt 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8471 gttgacgattcggtagtgaaatcaaatggaaaaaaagagaatgccatgatactttttttt 8412
Query: 744 ggaaaccactaatgatagtccaaaaagaaaaggcgtantagaactaanatgatggaataa 803
||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 8411 ggaaaccactaatgatagtccaaaaagaaaaggcgtataagaactaaaatgatggaataa 8352
Query: 804 tgggtatttcgaatccatctctgatagtaaggaaatgaaaatgttattataaagtgcaag 863
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 8351 tgggtatttcgaatccatctctgatagtaaggaaatgaaaatgttataataaagtgcaag 8292
Query: 864 ct-tcatcacatgagcgaagcttttttcttggnataatagcggcttttatctttctc-aa 921
|| ||||||||||||||||||||||| || || |||||||||||||||| ||||| ||
Sbjct: 8291 ctatcatcacatgagcgaagctttttcctcggataaatagcggcttttatc-ttctcaaa 8233
Query: 922 tgagggatcattagc-atgcccagaataccgcaatgaatggagtcg 966
||||| |||| |||| ||||| ||| ||||||||||||||||||||
Sbjct: 8232 tgaggaatca-tagcaatgccaagattaccgcaatgaatggagtcg 8188
>3x_Contig1805
Length = 19369
Score = 1352 bits (682), Expect = 0.0
Identities = 844/887 (95%), Gaps = 9/887 (1%)
Strand = Plus / Minus
Query: 85 aggttaaacgcataagaacctacaatctaatagcattaaacacgtttagatgattcactg 144
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 8921 aggttaaacgcataagaacctacaatctaatagcattaaacacgtttagatcattcactg 8862
Query: 145 attagaatttcggccaagagtacgccattctcgcaaatacccgtgctctctttcctatca 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8861 attagaatttcggccaagagtacgccattctcgcaaatacccgtgctctctttcctatca 8802
Query: 205 ttatcttcggtggtttatagataacttctataatttctgagttggtcattaatgttggta 264
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 8801 ttatcttcggtggtagatagataacttctataatttctgagttggacattaatgttggta 8742
Query: 265 ctggccttcgctctgtattacttgacatggtattgattttacaatgggagggtcagttat 324
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 8741 ctggccttcgctctgtattacttgacatggtattgattttacaatggtagcgtcagttat 8682
Query: 325 ggtttcatgctattattcattcatcactattctcacatttccgcaatactgaaaaggctg 384
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8681 ggttccatgctattattcattcatcactattctcacatttccgcaatactgaaaaggctg 8622
Query: 385 caactccatcgttttgtttacttgtttcctgtttaaggaatattttagaaaaacatcatg 444
|| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8621 cagctccatcattttgtttacttgtttcctgtttaaggaatattttagaaaaacatcatg 8562
Query: 445 aaaaaatgaccaagtatagcagaagttgcacagtgtttattgacatgtgcgatgccaact 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8561 aaaaaatgaccaagtatagcagaagttgcacagtgtttattgacatgtgcgatgccaact 8502
Query: 505 ttgaattgtcgtcggtc-ggtactccgttttgaaatgctggtatggcttttacgatagaa 563
||||| || | ||||| | | ||| | |||||| ||||| || | |||||||||||||
Sbjct: 8501 ttgaa-tgccaccggtctgatgctctggtttgaattgctgataaagtttttacgatagaa 8443
Query: 564 tgttttcaacaattattatacaaactaaggctaaaatttatgatgctaattaaatgcaag 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8442 tgttttcaacaattattatacaaactaaggctaaaatttatgatgctaattaaatgcaag 8383
Query: 624 aacttaaatgtggagggtttccatgagcacgtcaattgagagcagaaaaactgttaagaa 683
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 8382 aacttaaatgtggagggtttccatgagcaggtcaattgagagcagaaaaactgttaagaa 8323
Query: 684 gttgacgattcggtagtgaaatcaaatggaaaaaaagagaatgccatgatactttttttt 743
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 8322 gttgacgattcggtagtgaaatcaaatggaaaaaaagagaatgccatgatac-ttttttt 8264
Query: 744 ggaaaccactaatgatagtccaaaaagaaaaggcgtantagaactaanatgatggaataa 803
||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 8263 ggaaaccactaatgatagtccaaaaagaaaaggcgtataagaactaaaatgatggaataa 8204
Query: 804 tgggtatttcgaatccatctctgatagtaa-ggaaatgaaaatgttattataaagtgcaa 862
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 8203 tgggtatttcgaatccatctctgatagtaagggaaatgaaaatgttataataaagtgcaa 8144
Query: 863 gct-tcatcacatgagcgaagcttttttcttggnataatagcggcttttatctttctc-a 920
||| ||||||||||||||||||||||| || || |||||||||||||||| ||||| |
Sbjct: 8143 gctatcatcacatgagcgaagctttttcctcggataaatagcggcttttatc-ttctcaa 8085
Query: 921 atgagggatcattagc-atgcccagaataccgcaatgaatggagtcg 966
|||||| |||| |||| ||||| ||| ||||||||||||||||||||
Sbjct: 8084 atgaggaatca-tagcaatgccaagattaccgcaatgaatggagtcg 8039
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7351
Number of Sequences: 1807
Number of extensions: 7351
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 2
length of query: 967
length of database: 10,358,551
effective HSP length: 16
effective length of query: 951
effective length of database: 10,329,639
effective search space: 9823486689
effective search space used: 9823486689
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)