BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZA07RM1.SCF screened BAC_end
(904 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1536 1580 0.0
>3x_Contig1536
Length = 11572
Score = 1580 bits (797), Expect = 0.0
Identities = 839/850 (98%), Gaps = 3/850 (0%)
Strand = Plus / Minus
Query: 46 taacctcctcgtcgtctataaacattttagaagaggtaagtttattagtaaaactggaag 105
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 7257 taacctcctcgtcgtcaacaaacattttagaagaggtaagtttattagtaaaactggaag 7198
Query: 106 ggttcgcaattagggtcgtgttgaaaaaagatggtctaggatttaccattctcctcaata 165
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 7197 ggttcgcaattagggtcgtgttgaaaaaagatggtctaggatttac-attctcctcaata 7139
Query: 166 ttcgaaaggaacagagagtcagcatgactgctatgtttcttcttggaggctttgagactg 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7138 ttcgaaaggaacagagagtcagcatgactgctatgtttcttcttggaggctttgagactg 7079
Query: 226 cggctcgcatctatggatgacactttcccatcagagatggatctggctctttttttgcct 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7078 cggctcgcatctatggatgacactttcccatcagagatggatctggctctttttttgcct 7019
Query: 286 gaaacttgcgatttggtcgacctctgcttggtaactttggaagtgttcttcgctccagct 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7018 gaaacttgcgatttggtcgacctctgcttggtaactttggaagtgttcttcgctccagct 6959
Query: 346 ttgacattggaagggcggccagttttcttaattttcgtcgaatgaatatccgccttgacc 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6958 ttgacattggaagggcggccagttttcttaattttcgtcgaatgaatatccgccttgacc 6899
Query: 406 tggtccttcttcgaaacgcgccttttcgattttacttccgctagtttatcttcctcgtcg 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6898 tggtccttcttcgaaacgcgccttttcgattttacttccgctagtttatcttcctcgtcg 6839
Query: 466 ctctcaactcttgcaggtttccgacgttctcttagaaatgtcatgggaagaaaatactca 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6838 ctctcaactcttgcaggtttccgacgttctcttagaaatgtcatgggaagaaaatactca 6779
Query: 526 ctgcgcatatcatacttcatagactcttcaattaaagccatagtactcttcgtcatacgc 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6778 ctgcgcatatcatacttcatagactcttcaattaaagccatagtactcttcgtcatacgc 6719
Query: 586 ttaccttgagtgtcaccttcattcatgggtgtattatcccttgtattatcccttgtatta 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6718 ttaccttgagtgtcaccttcattcatgggtgtattatcccttgtattatcccttgtatta 6659
Query: 646 tcccttgtgctatccaccgaatgcatattggagaacaccgatgcatcagagctcgtggcc 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6658 tcccttgtgctatccaccgaatgcatattggagaacaccgatgcatcagagctcgtggcc 6599
Query: 706 tcagttgacatctccttcgtatgcgttctcaaacgtaactaaaacaaacgaaattatgac 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6598 tcagttgacatctccttcgtatgcgttctcaaacgtaactaaaacaaacgaaattatgac 6539
Query: 766 cttatttcatggaacaattgtacatcaantgcataaccagtggttcaagcaatccgttac 825
|||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 6538 cttatttcatggaacaattgtacatcaatgcaataaccagtgg-tcaagcaatccgttac 6480
Query: 826 agagtgaataggatcgttcc-acacaagaaggtatgttcgntactttctttcttgttgna 884
|||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
Sbjct: 6479 agagtgaataggatcgttccaacacaagaaggtatgttcgttactttctttcttgttgta 6420
Query: 885 tgtgggttgg 894
||||||||||
Sbjct: 6419 tgtgggttgg 6410
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5304
Number of Sequences: 1807
Number of extensions: 5304
Number of successful extensions: 32
Number of sequences better than 1.0e-20: 1
length of query: 904
length of database: 10,358,551
effective HSP length: 16
effective length of query: 888
effective length of database: 10,329,639
effective search space: 9172719432
effective search space used: 9172719432
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)