BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC17ZA08FM1.SCF screened BAC_end
         (952 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1219                                                        1544   0.0  

>3x_Contig1219 
          Length = 5018

 Score = 1544 bits (779), Expect = 0.0
 Identities = 838/852 (98%), Gaps = 6/852 (0%)
 Strand = Plus / Minus

                                                                        
Query: 86   taaagatttcacagaagtactatgaaatggcagctttgaccaatggacattctgtatcca 145
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4969 taaagatttcacagaagtactatgaaatggcagctttgaccaatggacattctgtatcca 4910

                                                                        
Query: 146  tgtacaagctcgggatgttctatttgaaaggactgagaacgaaatctggtgaaatcgtta 205
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4909 tgtacaagctcgggatgttctatttgaaaggactgagaacgaaatctggtgaaatcgtta 4850

                                                                        
Query: 206  tcaaaagagaccctgttcaagctttatactggtttagaatggctaccaaggagatcgaaa 265
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4849 tcaaaagagaccctgtacaagctttatactggtttagaatggctaccaaggagatcgaaa 4790

                                                                        
Query: 266  tcccacgagacgataaggctcatgtagaactggaatcagtatcgccacaagcgatggttg 325
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4789 tcccacgagacgataaggctcatgtagaactggaatcagtatcgccacaagcgatggttg 4730

                                                                        
Query: 326  agttgggtaagatttacggatttgaagagttagacgaatccgttagacaagagcttctga 385
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4729 agttgggtaagatttacggatttgaagagttagacgaatccgttagacaagagcttctga 4670

                                                                        
Query: 386  gaaacggaatcactcaagataaggaaaaatcgatcaaatactattatagatgcgcccatg 445
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4669 gaaacggaatcactcaagataaggaaaaatcgatcaaatactattatagatgcgcccatg 4610

                                                                        
Query: 446  acttcgattattctcaagcccaatacaaattgggtcatttttatgaatttggggagatgg 505
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4609 acttcgattattctcaagcccaatacaaattgggtcatttttatgaatttggggagatgg 4550

                                                                        
Query: 506  gactacctgtaatacccaagaagtccattgcatggtacgcaaagagttccatgaacaaga 565
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4549 gactacctgtaatacccaagaagtccattgcatggtacgcaaagagttccatgaacaaga 4490

                                                                        
Query: 566  ccaaaccaaacccgttagccatggtagcacttagtggctggtaccttaccggtgctgagg 625
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4489 ccaaaccaaacccgttagccatggtagcacttagtggctggtaccttaccggtgctgagg 4430

                                                                        
Query: 626  ggatattgaaaccgaacgacgtagaggccttcaagtgggtgtcacgtgcttcgaaattat 685
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4429 ggatattgaaaccgaacgacgtagaggccttcaagtgggtgtcacgtgcttcgaaattat 4370

                                                                        
Query: 686  ctgacgggaaattaccaagagcagagtatgcattagcattttacttggagaaaggccttg 745
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4369 ctgacgggaaattaccaagagcagagtatgcattagcattttacttggagaaaggccttg 4310

                                                                        
Query: 746  gatgtcagccaaacatacaagaggccaaggtacaccacgaaactgctgctcgtcttggcc 805
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4309 gatgtcagccaaacatacaagaggccaaggtacaccacgaaactgctgctcgtcttggcc 4250

                                                                        
Query: 806  atccgaaagccatcgagcctttgag--aaatgtgaccttgncggttta-ttttactgttc 862
            ||||||||||||||||| | |||||  |||||||||||||  | |||| ||||||||| |
Sbjct: 4249 atccgaaagccatcgaggccttgaggaaaatgtgaccttgcggttttatttttactgtcc 4190

                                                                        
Query: 863  tgcgtagctagcttcattgtaatga-atgtaataataagatttgtnttaga-tagttagt 920
            ||||||||||||||||||||||||| ||||||||||||||||||  ||||| ||||||||
Sbjct: 4189 tgcgtagctagcttcattgtaatgatatgtaataataagatttg-gttagagtagttagt 4131

                        
Query: 921  tattggtattct 932
            ||||||||||||
Sbjct: 4130 tattggtattct 4119


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5564
Number of Sequences: 1807
Number of extensions: 5564
Number of successful extensions: 29
Number of sequences better than 1.0e-20: 1
length of query: 952
length of database: 10,358,551
effective HSP length: 16
effective length of query: 936
effective length of database: 10,329,639
effective search space: 9668542104
effective search space used: 9668542104
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)