BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZA08RM1.SCF screened BAC_end
(913 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1678 1635 0.0
>3x_Contig1678
Length = 12472
Score = 1635 bits (825), Expect = 0.0
Identities = 857/866 (98%), Gaps = 2/866 (0%)
Strand = Plus / Minus
Query: 48 aatgacggagaatttagatttgttacattggagaagaatcgcggtaaaggaggagcagta 107
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 2486 aatgacggagaatttagagttgttacattggagaagaatcgcggtaaaggaggagcagta 2427
Query: 108 agacacgggatgttgcactccagaggcgaatatctattgtttgctgatgctgacggtgcc 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2426 agacacgggatgttgcactccagaggcgaatatctattgtttgctgatgctgacggtgcc 2367
Query: 168 tcgaagttctctgatgttgccaagcttttggcaaacacaaaggttgatgcacccgaggta 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2366 tcgaagttctctgatgttgccaagcttttggcaaacacaaaggttgatgcacccgaggta 2307
Query: 228 tcgattggatcacgtgctcatatggttaacaccgatgcagttgtcaagcgaacaattatc 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2306 tcgattggatcacgtgctcatatggttaacaccgatgcagttgtcaagcgaacaattatc 2247
Query: 288 agaaacttcttaatgtactctttacatgcattggtgttcatcttcggtattagatctatc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2246 agaaacttcttaatgtactctttacatgcattggtgttcatcttcggtattagatctatc 2187
Query: 348 aaggacacacaatgtggttttaaattatttaataggaaggctgctaaggaaattttccct 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2186 aaggacacacaatgtggttttaaattatttaataggaaggctgctaaggaaattttccct 2127
Query: 408 aagttacacactgaaggatggattttcgacgttgaaatcttgatcgttgcgttgcgtaaa 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2126 aagttacacactgaaggatggattttcgacgttgaaatcttgatcgttgcgttgcgtaaa 2067
Query: 468 aatattccaatcaatgagctaccgatctcatggcatgaagttgacggttccaaaatggat 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2066 aatattccaatcaatgagctaccgatctcatggcatgaagttgacggttccaaaatggat 2007
Query: 528 ttggctcgtgacagtattaacatggccaaggatttagtcatcataaggttagcatatata 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2006 ttggctcgtgacagtattaacatggccaaggatttagtcatcataaggttagcatatata 1947
Query: 588 ctaggcatatatagcgataaataagcttcatagaatttgcgcgaagataaagcgcaagta 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1946 ctaggcatatatagcgataaataagcttcatagaatttgcgcgaagataaagcgcaagta 1887
Query: 648 aggatatattctatcagattactttcatgaaacattgagtacaacccaagcttttatact 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1886 aggatatattctatcagattactttcatgaaacattgagtacaacccaagcttttatact 1827
Query: 708 ggtatgagatagatagaactatagaatatctgaaagtaacatagtaggtgattatgggat 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1826 ggtatgagatagatagaactatagaatatctgaaagtaacatagtaggtgattatgggat 1767
Query: 768 tcaaagcttattcgaaccttttgtaatgtcataggataaagatgaaagcttncttcttac 827
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct: 1766 tcaaagcttattcgaacctttgtaaatgtcataggataaagatgaaagcttccttcttac 1707
Query: 828 aatggtaccgttattcaaaaaggttctcacgatagctgcatattcttttactatcatgtt 887
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1706 aatggtaccgttattcaaaaaggttctcacgatagctgcatattc-tttactatcatgtt 1648
Query: 888 g-atgttatcanaagcatttaanagg 912
| ||||||||| |||||||||| |||
Sbjct: 1647 gaatgttatcaaaagcatttaagagg 1622
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5860
Number of Sequences: 1807
Number of extensions: 5860
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 913
length of database: 10,358,551
effective HSP length: 16
effective length of query: 897
effective length of database: 10,329,639
effective search space: 9265686183
effective search space used: 9265686183
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)