BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZA09RM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1377 1602 0.0
>3x_Contig1377
Length = 8397
Score = 1602 bits (808), Expect = 0.0
Identities = 866/882 (98%), Gaps = 4/882 (0%)
Strand = Plus / Plus
Query: 52 cagggggtaaaatgtttgactgcttcctttttttttctaagtggattttttttcaagatt 111
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1191 cagggggaaaaatgtttgactgcttcctttttttttctaagtggattttttttcaagatt 1250
Query: 112 ttcaccatacaaagacaaaaacgttgaccagttggacgtaatcgttctaaaagaaccggt 171
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1251 ttcaccatacaaagacaaaaacgttgaacagttggacgtaatcgttctaaaagaaccggt 1310
Query: 172 agatcaataaaaaaaagataaacagtccggttattgttgttgatatccaacccctcgcta 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1311 agatcaataaaaaaaagataaacagtccggttattgttgttgatatccaacccctcgcta 1370
Query: 232 agctatgaaaattgaaaggtgtctattgggagacgtatggtgccacatataccaggggca 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1371 agctatgaaaattgaaaggtgtctattgggagacgtatggtgccacatataccaggggca 1430
Query: 292 caggtttgccgtagaagcgatagaaagcatgcaataaacgacggttgtttatccgaatct 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1431 caggtttgccgtagaagcgatagaaagcatgcaataaacgacggttgtttatccgaatct 1490
Query: 352 gaacccaaaaaccaaagacaaacacgcagcagaaaaacaaaatgtttttccgcaaagcac 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1491 gaacccaaaaaccaaagacaaacacgcagcagaaaaacaaaatgtttttccgcaaagcac 1550
Query: 412 tttgtacgtcttctattttcttttttttgtcttagtttttccgagatgagcagctggaaa 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1551 tttgtacgtcttctattttcttttttttgtcttagtttttccgagatgagcagctggaaa 1610
Query: 472 tactcagtagaaagctcagtaggaaaaaccacaccacttcccacgcatcttgacgcaaaa 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1611 tactcagtagaaagctcagtaggaaaaaccacaccacttcccacgcatcttgacgcaaaa 1670
Query: 532 ttcccattctgagcataatattttcccattcattgagcttcctatgtaaggtttatccga 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1671 ttcccattctgagcataatattttcccattcattgagcttcctatgtaaggtttatccga 1730
Query: 592 cgttttatctactgcggcgattgcatgtttggcccttttcacacccttccactgaaaagc 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1731 cgttttatctactgcggcgattgcatgtttggcccttttcacacccttccactgaaaagc 1790
Query: 652 atgttgaacaggattaaaacgcacgccagagcactaagtggtgccattcccctacggatg 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1791 atgttgaacaggattaaaacgcacgccagagcactaagtggtgccattcccctacggatg 1850
Query: 712 aacccaaaaacacactgtccatgagcggaagctggcaggagttaagatgaaacgttcctt 771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1851 aacccaaaaacacactgtccatgagcggaagctggcaggagttaagatgaaacgttcctt 1910
Query: 772 atcctcttcccgtccacgaaagatataggcagcgtttccagaatgggtgcacccttacat 831
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1911 atcctcttcccgtccacgaaagatataggcagcgtttccagaatgggtgcaccctaacat 1970
Query: 832 acgtattttcttacgaccagttttgaaatgggctggaatgtgaaactat-atacgttttt 890
|||||||| || ||||||||||| ||||||||||||||||| |||||| ||||||||||
Sbjct: 1971 acgtatttcctaacgaccagtttgaaaatgggctggaatgtg-aactataatacgttttt 2029
Query: 891 cccctttcccttgnc--agtttttgtggggctttttttgctt 930
|||||||||| | | ||||||||| || ||||||||||||
Sbjct: 2030 cccctttcccctcgccaagtttttgttggtctttttttgctt 2071
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8333
Number of Sequences: 1807
Number of extensions: 8333
Number of successful extensions: 70
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)