BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZA10FM1.SCF screened BAC_end
(959 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1728 1546 0.0
>3x_Contig1728
Length = 20685
Score = 1546 bits (780), Expect = 0.0
Identities = 857/876 (97%), Gaps = 6/876 (0%)
Strand = Plus / Plus
Query: 89 gaatcaaatagcttggcaattgcaggttttaaattgtagatgttgagattcatactttca 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12071 gaatcaaatagcttggcaattgcaggttttaaattgtagatgttgagattcatactttca 12130
Query: 149 tgagtgaaaacatcagatagcaacctagcaaagtccgaatattgctggtttggtagtgaa 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12131 tgagtgaaaacatcagatagcaacctagcaaagtccgaatattgctggtttggtagtgaa 12190
Query: 209 cttccatacacttccataaaccctaagatttgctggctgagaactggtttcaatgttctc 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12191 cttccatacacttccataaaccctaagatttgctggctgagaactggtttcaatgttctc 12250
Query: 269 ctcgaaaaagattgatctaaaatggcagttgcgtaatgaagcatgatcttgaaaatagcc 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12251 ctcgaaaaagattgatctaaaatggcagttgcgtaatgaagcatgatcttgaaaatagcc 12310
Query: 329 tgatcattgagggcagataagaatgtcgtataatggaagatgcctcttatgagagccaaa 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12311 tgatcattgagggcagataagaatgtcgtataatggaagatgcctcttatgagagccaaa 12370
Query: 389 tgcaatggttgttgattgagtaccaacctctcttctattaaagaatcccatattctgcac 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12371 tgcaatggttgttgattgagtaccaacctctcttctattaaagaatcccatattctgcac 12430
Query: 449 tgtaaacccattgcactattcaaaacatgtttctccatatcagtaagctcatgcagtgtt 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12431 tgtaaacccattgcactattcaaaacatgtttctccatatcagtaagctcatgcagtgtt 12490
Query: 509 gggagaatgtagacatctaatattgattgacaaagatagctgatttcaagatttcccaaa 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12491 gggagaatgtagacatctaatattgattgacaaagatagctgatttcaagatttcccaaa 12550
Query: 569 taatttccattatccctttcggcattttcttgcaagagatccaataatgtattcagctgt 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12551 taatttccattatccctttcggcattttcttgcaagagatccaataatgtattcagctgt 12610
Query: 629 tcttcagtcaggggagatgatttgatgcaaattcttagcaacttgaagaaatttgcataa 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12611 tcttcagtcaggggagatgatttgatgcaaattcttagcaacttgaagaaatttgcataa 12670
Query: 689 atttcatcttttagcttgaaaggaagattgttttctgatcttatgtactccccaattatg 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12671 atttcatcttttagcttgaaaggaagattgttttctgatcttatgtactccccaattatg 12730
Query: 749 cggtataaattaagcaaattttcaaa-gatatggtgatctgagaaggactttgcantacc 807
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 12731 cggtataaattaagcaaattttcaaaggatatggtgatctgagaaggactttgcataacc 12790
Query: 808 ttatcaaac-atgatacanaaaagtcgaattta-caggtaaaaactcggagaacaagctc 865
||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 12791 ttatcaaacaatgatacaaaaaagtcgaatttatcaggtaaaaactcggagaacaagctc 12850
Query: 866 ttaaaaa-tggcagagga-taatgggcacgtagacagctggcgtaaactgtgggtagttc 923
||||||| |||||||||| |||||| ||||||||||||||||||||||||| || |
Sbjct: 12851 ttaaaaattggcagaggattaatggcaccgtagacagctggcgtaaactgtggtaggtcc 12910
Query: 924 aaaatgacttttagctttcttgnagntattactttc 959
|||||||| |||||||| |||| || ||||||||||
Sbjct: 12911 aaaatgac-tttagcttccttgtagttattactttc 12945
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6723
Number of Sequences: 1807
Number of extensions: 6723
Number of successful extensions: 32
Number of sequences better than 1.0e-20: 1
length of query: 959
length of database: 10,358,551
effective HSP length: 16
effective length of query: 943
effective length of database: 10,329,639
effective search space: 9740849577
effective search space used: 9740849577
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)