BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZA10RM1.SCF screened BAC_end
(921 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1749 1582 0.0
>3x_Contig1749
Length = 22923
Score = 1582 bits (798), Expect = 0.0
Identities = 846/857 (98%), Gaps = 5/857 (0%)
Strand = Plus / Minus
Query: 43 atcaagctttaaatgaaactgctgtttatggatgtattacgaatatcgattacttgagat 102
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 9459 atcaagctttaaatgaaactgctgtttacggatgtattacgaatatcgattacttgagat 9400
Query: 103 ctattgcatcgtcaaaaatgttcaaagaagcaaaggttgctacgaaggttttggattctt 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9399 ctattgcatcgtcaaaaatgttcaaagaagcaaaggttgctacgaaggttttggattctt 9340
Query: 163 ttgattataagccatgcgcatttgaagtgttggcacctggtgcgaacacttctgttcagg 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9339 ttgattataagccatgcgcatttgaagtgttggcacctggtgcgaacacttctgttcagg 9280
Query: 223 attatccagggagaacaggatactggagaatcggtgttcctccatcaggtccaatggatt 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9279 attatccagggagaacaggatactggagaatcggtgttcctccatcaggtccaatggatt 9220
Query: 283 cttattcttttagattggctaatagggttgttggcaataactcaaaatcccctgctcttg 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9219 cttattcttttagattggctaatagggttgttggcaataactcaaaatcccctgctcttg 9160
Query: 343 aaatcactttgaatggtccaaagctattattccacacggaaactgtgattgccgtatctg 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9159 aaatcactttgaatggtccaaagctattattccacacggaaactgtgattgccgtatctg 9100
Query: 403 gtggtactgtctcttgtacattaaacgacgctcaaattgcacagaatgaaccaatagaag 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9099 gtggtactgtctcttgtacattaaacgacgctcaaattgcacagaatgaaccaatagaag 9040
Query: 463 ttaaacgcggtgatattttgtcagttggaaaagtcactgtgggatgcagagcgtatttgt 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9039 ttaaacgcggtgatattttgtcagttggaaaagtcactgtgggatgcagagcgtatttgt 8980
Query: 523 caataagaggagggattgatgttcctgaatatcttggctcaagatcaacgtttgcaatgg 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8979 caataagaggagggattgatgttcctgaatatcttggctcaagatcaacgtttgcaatgg 8920
Query: 583 gaaacatgggaggttacaatggaagaattttgaaactaggtgacgttctattcttaaacc 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8919 gaaacatgggaggttacaatggaagaattttgaaactaggtgacgttctattcttaaacc 8860
Query: 643 aaccagagttatctgtttcctcattaccagctcccgatttcgaaccgcaagcagctccga 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8859 aaccagagttatctgtttcctcattaccagctcccgatttcgaaccgcaagcagctccga 8800
Query: 703 agtcattattgccaacgctttcgacgaataaagactggaaaattggtgtcacatgtggtc 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8799 agtcattattgccaacgctttcgacgaataaagactggaaaattggtgtcacatgtggtc 8740
Query: 763 ctcatggatccattgaccttttcaaagaaagatacattgagcaattctttaacgacaaat 822
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 8739 ctcatggatccattgaccttttcaaagaagaatacattgagcaattctttaacgacaaat 8680
Query: 823 ggaaagttcattataactccaacagnattttgtgtcagaattaattggggccttaaacct 882
||||||||||||||||||||||||| |||| ||||||| |||||||||| | ||||||
Sbjct: 8679 ggaaagttcattataactccaacag-atttggtgtcag-attaattggg--cctaaacc- 8625
Query: 883 taaatgggcaatatcgg 899
||||||||||| |||||
Sbjct: 8624 taaatgggcaagatcgg 8608
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6896
Number of Sequences: 1807
Number of extensions: 6896
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 921
length of database: 10,358,551
effective HSP length: 16
effective length of query: 905
effective length of database: 10,329,639
effective search space: 9348323295
effective search space used: 9348323295
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)