BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZA11FM1.SCF screened BAC_end
(956 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig424 1655 0.0
>3x_Contig424
Length = 1467
Score = 1655 bits (835), Expect = 0.0
Identities = 853/861 (99%)
Strand = Plus / Minus
Query: 95 atttcagtagttaaatgtgtaatccctaaggatatgggctttttggaagtgatcttttta 154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1185 atttcagtagttaaatgtgtaatccctaaggatatgggctttttggaagtgatcttttta 1126
Query: 155 agtccggggggcaaattgctgaaacagtaccttacccttatgttacaggccagtgtatac 214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1125 agtccggggggcaaattgctgaaacagtaccttacccttatgttacaggccagtgtatac 1066
Query: 215 ttnactantagattgaaattactgatagggtaatgccaatgagaactacagaattcatac 274
| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1065 tatacgattagattgaaattactgatagggtaatgccaatgagaactacagaattcatac 1006
Query: 275 tcgtatagagcttgtataaatcagatcagttatattccagaaccaatgggttaagtgaga 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1005 tcgtatagagcttgtataaatcagatcagttatattccagaaccaatgggttaagtgaga 946
Query: 335 acataatttgatatataattcaacttacaattctgttgtatgcggatttgagaagaatcc 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 945 acataatttgatatataattcaacttacaattctgttgtatgcggatttgagaagaatcc 886
Query: 395 tattggggctctccaagcaaattatcgatcatgagccattttcagtgacatcagaaagct 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 885 tattggggctctccaagcaaattatcgatcatgagccattttcagtgacatcagaaagct 826
Query: 455 tgaagttaacctgttaataccacgcttaaaagtctcaaacagacatccaatatgttgtta 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825 tgaagttaacctgttaataccacgcttaaaagtctcaaacagacatccaatatgttgtta 766
Query: 515 taagctgcgcgagtggtgtgcactctgtttttctatacatcgattttcttttgaaatacg 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 taagctgcgcgagtggtgtgcactctgtttttctatacatcgattttcttttgaaatacg 706
Query: 575 taaaatttaaagcataaaacaataatatttgcccatatcaaaccatctactctaaacagc 634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 taaaatttaaagcataaaacaataatatttgcccatatcaaaccatctactctaaacagc 646
Query: 635 tagattttgtgtgaataaggaaataatgtctagtacccagacagaagccataagtgattc 694
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 tagattttgtgtgaataaggaaataatgtctagtacccagacagaagccataagtgattc 586
Query: 695 acccatatgaacaaagtgttaacacacggaaatgacatggaaaatgttntcgtaaatgta 754
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 585 acccatatgaacaaagtgttaacacacggaaatgacatggaaaatgttttcgtaaatgta 526
Query: 755 tctacacttatcaccaaagttctgttaacggctcaatcgcacattaacattgatgaatag 814
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 tctacacttatcaccaaagttctgttaacggctcaatcgcacattaacattgatgaatag 466
Query: 815 gtatacgttcgtacttgaggtttcacagtanaaatcatagtccatataacggaacanatt 874
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct: 465 gtatacgttcgtacttgaggtttcacagtaaaaatcatagtccatataacggaacaaatt 406
Query: 875 agacttcgtctgactatcagccaaaccctgtaaaaacaccnactagtacattgttatgca 934
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 405 agacttcgtctgactatcagccaaaccctgtaaaaacacccactagtacattgttatgca 346
Query: 935 tgtcctttcgctgttgctgtg 955
|||||||||||||||||||||
Sbjct: 345 tgtcctttcgctgttgctgtg 325
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5605
Number of Sequences: 1807
Number of extensions: 5605
Number of successful extensions: 30
Number of sequences better than 1.0e-20: 1
length of query: 956
length of database: 10,358,551
effective HSP length: 16
effective length of query: 940
effective length of database: 10,329,639
effective search space: 9709860660
effective search space used: 9709860660
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)