BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZA12FM1.SCF screened BAC_end
(971 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1543 1528 0.0
>3x_Contig1543
Length = 9648
Score = 1528 bits (771), Expect = 0.0
Identities = 856/875 (97%), Gaps = 7/875 (0%)
Strand = Plus / Plus
Query: 87 ctgtatattagattcaatgccaattcaatcctcttattaaacaaagcgtgctttttttga 146
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 450 ctgtatattagattcaatgccaatgcaatcctcttattaaacaaagcgtgctttttttga 509
Query: 147 aaagactttgaggatacttctccttcattcggtacgcatcgtatttgtagtgcatcaatc 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 aaagactttgaggatacttctccttcattcggtacgcatcgtatttgtagtgcatcaatc 569
Query: 207 cataacttaaccttgaggatatttaattggctgacttccgtgagacaactcaactgcttt 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 cataacttaaccttgaggatatttaattggctgacttccgtgagacaactcaactgcttt 629
Query: 267 aagaaacattcgtaatcatcatctgttccatgaacattcgttacatcaatagtaccactt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 aagaaacattcgtaatcatcatctgttccatgaacattcgttacatcaatagtaccactt 689
Query: 327 ttcgcaagacttt-cattatccagacaattttcatcatcagcttcaatcgttttagatag 385
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 ttcgcaagacttttcattatccagacaattttcatcatcagcttcaatcgttttagatag 749
Query: 386 tacagctcggagctcggtgacttgggacctttcctttaagacttgagaacaaatatcgat 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 tacagctcggagctcggtgacttgggacctttcctttaagacttgagaacaaatatcgat 809
Query: 446 caatttagtgttccagaaatctggagtcgcaatccttgaaacgagtggctgaagaaccga 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 caatttagtgttccagaaatctggagtcgcaatccttgaaacgagtggctgaagaaccga 869
Query: 506 acacgccacaacttctcttagaattgtcctgacaaaaggtgattctaactccttgggatc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 870 acacgccacaacttctcttagaattgtcctgacaaaaggtgattctaactccttgggatc 929
Query: 566 aacaagaatcgatagcaactctttagctcttttccgggaataattttgtacatcctcaga 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 930 aacaagaatcgatagcaactctttagctcttttccgggaataattttgtacatcctcaga 989
Query: 626 aagactttcctgactcaaagtgagagatagatccttatggatacggtactgcttattgaa 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 990 aagactttcctgactcaaagtgagagatagatccttatggatacggtactgcttattgaa 1049
Query: 686 ttccactgctacagctaaatccacattttgttcaggtttgtctatagcaacgctacttgt 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1050 ttccactgctacagctaaatccacattttgttcaggtttgtctatagcaacgctacttgt 1109
Query: 746 gatgctctcttgagatatatagaaggtagtgtaatgtttcgtcaataaa-gtagtattct 804
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1110 gatgctctcttgagatatatagaaggtagtgtaatgtttcgtcaataaaggtagtattct 1169
Query: 805 t-aaatcat-tactcacaaa-gtcaacatctgagagagcaattcgaaatcgtattattgc 861
| ||||||| ||||||||| ||||||||||||||||||||| |||||||||||| ||
Sbjct: 1170 taaaatcatcaactcacaaaggtcaacatctgagagagcaatcgaaaatcgtattatggc 1229
Query: 862 ctttttttacaccgatttcacagtatttgggaaattttgtctgattcactgattgatcca 921
|| |||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 1230 ctcttttaacaccgatttcacagta-ttgggaaa-tttgtctgattcactgattgatcca 1287
Query: 922 caacagaataaaatgaaattgctggtgatgttatt 956
| ||| ||||||||||||||||| ||||||||||
Sbjct: 1288 aaccaggataaaatgaaattgctgatgatgttatt 1322
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6806
Number of Sequences: 1807
Number of extensions: 6806
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 971
length of database: 10,358,551
effective HSP length: 16
effective length of query: 955
effective length of database: 10,329,639
effective search space: 9864805245
effective search space used: 9864805245
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)