BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZA12RM1.SCF screened BAC_end
(948 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1485 1453 0.0
>3x_Contig1485
Length = 9830
Score = 1453 bits (733), Expect = 0.0
Identities = 863/896 (96%), Gaps = 8/896 (0%)
Strand = Plus / Minus
Query: 45 ctttcttcttctcctgttgctctttctcctttct-aatcgt-ccattgcttcgaacggat 102
|||||||||||||||||||||| ||||||||||| |||||| |||||| |||||||||||
Sbjct: 7626 ctttcttcttctcctgttgctccttctcctttcttaatcgtaccattgtttcgaacggat 7567
Query: 103 cctcatcaaataaccgagcacattttcccgggttttcttt-aataacgcctttctgaaat 161
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 7566 cctcatcaaataaccgagcacattttcccgggttttctttcaataacgcctttctgaaat 7507
Query: 162 cttcaaggtcataccatagattcttatggtttggtggaagcattagatatattttgttgt 221
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct: 7506 cttcaaggtcataccatagattcttatggtttggtggaagcattagatatagcttgctgt 7447
Query: 222 tgaatgcaattctatgcaaggccactgtagccgcatttttatcgggcctcagcgggtgtg 281
|||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||
Sbjct: 7446 tgaatgcaattctatgcaaggccactgtagccgcataatga-cgggcctcagcgggtgtg 7388
Query: 282 ctttgtggaggaacaatttcctttttttccaaactcatccgcaaaaccaaagtttcttta 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7387 ctttgtggaggaacaatttcctttttttccaaactcatccgcaaaaccaaagtttcttta 7328
Query: 342 gtcttgggatcagtacaagatatcaacgctgtagacaccagccctttatccccaatcttc 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7327 gtcttgggatcagtacaagatatcaacgctgtagacaccagccctttatccccaatcttc 7268
Query: 402 ttcatatcatactcaactttattccatttctgtttctgacaatattcatgtaacacactg 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7267 ttcatatcatactcaactttattccatttctgtttctgacaatattcatgtaacacactg 7208
Query: 462 tgaggcagtttccctgtccaactaaccgagctagtcacattagcacgtgactgtaatcgc 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7207 tgaggcagtttccctgtccaactaaccgagctagtcacattagcacgtgactgtaatcgc 7148
Query: 522 tttgccttctcctcctcgcttaatggttcacgcttattcttcccgccactacctttcttt 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7147 tttgccttctcctcctcgcttaatggttcacgcttattcttcccgccactacctttcttt 7088
Query: 582 cctttattattatcattggtcggtagttcttgaactggaacattcttcttcttcttagcc 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7087 cctttattattatcattggtcggtagttcttgaactggaacattcttcttcttcttagcc 7028
Query: 642 atgatttggaattccgaaggaaaatacgttcgcagtataatagctttcttaaaacaaata 701
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 7027 atgatttggaattccgaaggaaaatacgttcgcagtaaaatagcttccttaaaacaaata 6968
Query: 702 tccgatggatactggcacacaattaacggaagcgttagttgtcctctgtattcaaacacg 761
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6967 tccgatggatactgtcacacaattaacggaagcgttagttgtcctctgtattcaaacacg 6908
Query: 762 ccttctgatctatttggacttggatcctaccagttaacaatgatttaataatgaatggtt 821
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 6907 ccctctgatctatttggacttggatcctaccagttaacaatgatataataatgaatggtt 6848
Query: 822 cagatgttgttctatttcttggattccgggtaacattattaaaattttttaatttcaact 881
||||||||||||||||||||| | |||||||||||| ||||||||||| |||||||||
Sbjct: 6847 cagatgttgttctatttcttgta-tccgggtaacataattaaaattttgaaatttcaacg 6789
Query: 882 aagtcaacgattacaaggcattttagtatgaaataantctacaccgctttaggttc 937
||| || ||| || |||||||||| ||||||||| || |||||| |||||||||
Sbjct: 6788 aag-cagcgagaac-aggcattttaagatgaaataattcaacaccg-tttaggttc 6736
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9335
Number of Sequences: 1807
Number of extensions: 9335
Number of successful extensions: 79
Number of sequences better than 1.0e-20: 1
length of query: 948
length of database: 10,358,551
effective HSP length: 16
effective length of query: 932
effective length of database: 10,329,639
effective search space: 9627223548
effective search space used: 9627223548
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)